RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 EDIL3O43854 480 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 SYT1P21579 422 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 CCND2P30279 289 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 SREBF1P36956 1147 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 MRPS9P82933 396 aaKnown RBP9.78□□□□□ -0.84
NUP88-211ENST00000575976 CACNB2Q08289 660 aaPredicted RBP9.78□□□□□ -0.84
NUP88-211ENST00000575976 ACVR2BQ13705 512 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 STXBP2Q15833 593 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 SLC9C1Q4G0N8 1177 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 PCNX4Q63HM2 1172 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 PIK3AP1Q6ZUJ8 805 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 KRT25Q7Z3Z0 450 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 SLC17A8Q8NDX2 589 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 TRPV1Q8NER1 839 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 MPHOSPH6Q99547 160 aaKnown RBP9.78□□□□□ -0.84
NUP88-211ENST00000575976 KATNBL1Q9H079 304 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 ABHD16BQ9H3Z7 469 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 EHMT1Q9H9B1 1298 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 RTEL1Q9NZ71 1219 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 PLXNA1Q9UIW2 1896 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 CCDC194A0A1B0GVG4 234 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 VPS37CA5D8V6 355 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 FAM205CA6NFA0 338 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 EIF3JO75822 258 aaKnown RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 ZNF865P0CJ78 1059 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 CYBAP13498 195 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 PRKAR2AP13861 404 aaKnown RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 PDCP20941 246 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 CCND3P30281 292 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 ARHGAP4P98171 946 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 NONOQ15233 471 aaKnown RBP eCLIP9.77□□□□□ -0.85
NUP88-211ENST00000575976 INF2Q27J81 1249 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 MAP3K21Q5TCX8 1036 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 TAPT1Q6NXT6 567 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 FBXO16Q8IX29 292 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 TBCKQ8TEA7 893 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 CRYGNQ8WXF5 182 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 FOXP1Q9H334 677 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 VTA1Q9NP79 307 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 PDGFCQ9NRA1 345 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 ZHX1Q9UKY1 873 aaPredicted RBP9.77□□□□□ -0.85
NUP88-211ENST00000575976 CNPY2Q9Y2B0 182 aa9.77□□□□□ -0.85
NUP88-211ENST00000575976 MKI67P46013 3256 aaKnown RBP9.76□□□□□ -0.85
NUP88-211ENST00000575976 RGS20O76081 388 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 MYCP01106 439 aaPredicted RBP9.76□□□□□ -0.85
NUP88-211ENST00000575976 CYP3A4P08684 503 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 ITGB5P18084 799 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 U2AF2P26368 475 aaKnown RBP eCLIP9.76□□□□□ -0.85
NUP88-211ENST00000575976 CNGA1P29973 690 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 ZNF76P36508 570 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 ADCYAP1R1P41586 468 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 GNL2Q13823 731 aaKnown RBP9.76□□□□□ -0.85
NUP88-211ENST00000575976 MTFR1Q15390 333 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 TMEM63BQ5T3F8 832 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 MCTP1Q6DN14 999 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 XRRA1Q6P2D8 792 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 SEPT14Q6ZU15 432 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 CYP2W1Q8TAV3 490 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 ARMC5Q96C12 935 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 MXRA8Q9BRK3 442 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 WDR11Q9BZH6 1224 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 HMX1Q9NP08 348 aaPredicted RBP9.76□□□□□ -0.85
NUP88-211ENST00000575976 NRBP1Q9UHY1 535 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 MTMR6Q9Y217 621 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 UBIAD1Q9Y5Z9 338 aa9.76□□□□□ -0.85
NUP88-211ENST00000575976 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.75□□□□□ -0.85
NUP88-211ENST00000575976 RBM47A0AV96 593 aaKnown RBP9.75□□□□□ -0.85
NUP88-211ENST00000575976 FAM86B1E9PN63 330 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 STX6O43752 255 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 STAM2O75886 525 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 ARIH2O95376 493 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 TDP2O95551 362 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 FAM86B2P0C5J1 330 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 CCL5P13501 91 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 CIITAP33076 1130 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 USP11P51784 963 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 SEMA3FQ13275 785 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 LETM2Q2VYF4 491 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 CCDC144BQ3MJ40 725 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 ANO1Q5XXA6 986 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 IQSEC1Q6DN90 963 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 NEK8Q86SG6 692 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 NLRX1Q86UT6 975 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 FERMT3Q86UX7 667 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 NOSTRINQ8IVI9 506 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 ZNF333Q96JL9 665 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 INPP4AQ96PE3 977 aaPredicted RBP9.75□□□□□ -0.85
NUP88-211ENST00000575976 TMEM106CQ9BVX2 250 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 UNC93B1Q9H1C4 597 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 JADE2Q9NQC1 790 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 FAM184BQ9ULE4 1060 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 SZT2Q5T011 3432 aa9.75□□□□□ -0.85
NUP88-211ENST00000575976 SPATA31C2B4DYI2 1134 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 MEIS1O00470 390 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 WNT7AO00755 349 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 SEPT4O43236 478 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 ADCY6O43306 1168 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 FIBPO43427 364 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 ARP10275 920 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 AKR1A1P14550 325 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms