RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ANO3Q9BYT9 981 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 WDR11Q9BZH6 1224 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 BRMS1Q9HCU9 246 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 LRRC37A2A6NM11 1700 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 DNM1LO00429 736 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 PPFIA3O75145 1194 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 TXNP10599 105 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 FDPSP14324 419 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 EN2P19622 333 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 CST5P28325 142 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 ICAM3P32942 547 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 SREBF1P36956 1147 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 RGS19P49795 217 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 GJA9P57773 515 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 ST3GAL1Q11201 340 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 UBE2SQ16763 222 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 BRDTQ58F21 947 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 IFFO2Q5TF58 517 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 FAM184AQ8NB25 1140 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 PCSK9Q8NBP7 692 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 TSEN34Q9BSV6 310 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 PHF20Q9BVI0 1012 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 AP5M1Q9H0R1 490 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 UPF3AQ9H1J1 476 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 PDGFCQ9NRA1 345 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 GNEQ9Y223 722 aaKnown RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-214ENST00000575431 KIAA1217Q5T5P2 1943 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 FRMPD3Q5JV73 1810 aa10.93□□□□□ -0.66
CCDC40-214ENST00000575431 KBTBD13C9JR72 458 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 FIBPO43427 364 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 ZEB2O60315 1214 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 ADAMTS4O75173 837 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 FARP2O94887 1054 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-214ENST00000575431 CYP3A4P08684 503 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 SMPD1P17405 629 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 MRPS9P82933 396 aaKnown RBP10.92□□□□□ -0.66
CCDC40-214ENST00000575431 JAKMIP3Q5VZ66 844 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 CCDC62Q6P9F0 684 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 SEPT14Q6ZU15 432 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 KRT25Q7Z3Z0 450 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 NECAB2Q7Z6G3 386 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 TLK2Q86UE8 772 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 GIMAP8Q8ND71 665 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-214ENST00000575431 SNX21Q969T3 373 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 GPRASP2Q96D09 838 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 SHISA4Q96DD7 197 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 INPP4AQ96PE3 977 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-214ENST00000575431 MRVI1Q9Y6F6 885 aa10.92□□□□□ -0.66
CCDC40-214ENST00000575431 SYNRGQ9UMZ2 1314 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 MOXD2PA6NHM9 499 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 DYNC1LI2O43237 492 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 JAK2O60674 1132 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 KPNA6O60684 536 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 CAPN15O75808 1086 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 GH1P01241 217 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 C6orf222P0C671 652 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 ZNF76P36508 570 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 CPT1AP50416 773 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 USP11P51784 963 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 ARHGAP4P98171 946 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 LAMC2Q13753 1193 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 NEDD9Q14511 834 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 LRRC41Q15345 812 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 SAFBQ15424 915 aaKnown RBP eCLIP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 GNASQ5JWF2 1037 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 ANO1Q5XXA6 986 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 NIPA1Q7RTP0 329 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 KLHDC9Q8NEP7 349 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 IL31RAQ8NI17 732 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 C8orf76Q96K31 380 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 AIFM3Q96NN9 605 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 NAP1L4Q99733 375 aaKnown RBP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 SENP7Q9BQF6 1050 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 MXRA8Q9BRK3 442 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 JADE2Q9NQC1 790 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 TMEM260Q9NX78 707 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 DDX41Q9UJV9 622 aaKnown RBP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 UBIAD1Q9Y5Z9 338 aa10.91□□□□□ -0.66
CCDC40-214ENST00000575431 DDX49Q9Y6V7 483 aaKnown RBP10.91□□□□□ -0.66
CCDC40-214ENST00000575431 CCDC194A0A1B0GVG4 234 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-214ENST00000575431 SPATA31C2B4DYI2 1134 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 M0R2N6 131 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 CABYRO75952 493 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 RGS20O76081 388 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 CD2BP2O95400 341 aaKnown RBP10.9□□□□□ -0.66
CCDC40-214ENST00000575431 PGK1P00558 417 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 MMP1P03956 469 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 KRT2P35908 639 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 MTMR1Q13613 665 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 CUL4AQ13619 759 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 NONOQ15233 471 aaKnown RBP eCLIP10.9□□□□□ -0.66
CCDC40-214ENST00000575431 CEP55Q53EZ4 464 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 UBE2Q1Q7Z7E8 422 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 DHX37Q8IY37 1157 aaKnown RBP10.9□□□□□ -0.66
CCDC40-214ENST00000575431 OR6J1Q8NGC5 347 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 CRYGNQ8WXF5 182 aa10.9□□□□□ -0.66
CCDC40-214ENST00000575431 EMID1Q96A84 441 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-214ENST00000575431 HTATIP2Q9BUP3 242 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms