RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 LILRA6Q6PI73 481 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 B3GNT8Q7Z7M8 397 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 RIOX2Q8IUF8 465 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 FAM177A1Q8N128 213 aaPredicted RBP4.94□□□□□ -1.62
NUP88-209ENST00000574855 TMEM145Q8NBT3 493 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 RCBTB1Q8NDN9 531 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 KCTD13Q8WZ19 329 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 TMEM169Q96HH4 297 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 SGSM3Q96HU1 749 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 CHAMP1Q96JM3 812 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 KCNC2Q96PR1 638 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 BCAS3Q9H6U6 928 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 SIT1Q9Y3P8 196 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 PCDHA2Q9Y5H9 948 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 PMF1-BGLAPU3KQ54 211 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 ARNTLO00327 626 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 U2SURPO15042 1029 aaKnown RBP4.93□□□□□ -1.62
NUP88-209ENST00000574855 TRIM13O60858 407 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 CAPNS1P04632 268 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 ATP2B1P20020 1258 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 MC3RP41968 323 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 GRIA2P42262 883 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 CACNB2Q08289 660 aaPredicted RBP4.93□□□□□ -1.62
NUP88-209ENST00000574855 LSAMPQ13449 338 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 SP8Q8IXZ3 490 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 CKAP2LQ8IYA6 745 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 ST13P5Q8NFI4 369 aaPredicted RBP4.93□□□□□ -1.62
NUP88-209ENST00000574855 FNIP1Q8TF40 1166 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 SEC14L1Q92503 715 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 COA3Q9Y2R0 106 aaPredicted RBP4.93□□□□□ -1.62
NUP88-209ENST00000574855 X6R8D5 127 aa4.93□□□□□ -1.62
NUP88-209ENST00000574855 H7BY64 318 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 SGSM2O43147 1006 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 HOXA5P20719 270 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 FPR2P25090 351 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 SLC6A11P48066 632 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 CTSWP56202 376 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 MAP4K2Q12851 820 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 SLC35F1Q5T1Q4 408 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 DENND5AQ6IQ26 1287 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 MILR1Q7Z6M3 343 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 Q8N1Y9 231 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 IER2Q9BTL4 223 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 TANGO6Q9C0B7 1094 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 PCDH18Q9HCL0 1135 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 NPFFR2Q9Y5X5 522 aa4.92□□□□□ -1.62
NUP88-209ENST00000574855 FFAR3O14843 346 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 PLA2G1BP04054 148 aaKnown RBP4.91□□□□□ -1.62
NUP88-209ENST00000574855 CYP2C8P10632 490 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 LCP1P13796 627 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 HTRA3P83110 453 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 CHRNA2Q15822 529 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 ETV3LQ6ZN32 361 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 SAPCD2Q86UD0 394 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 LRRC47Q8N1G4 583 aaKnown RBP4.91□□□□□ -1.62
NUP88-209ENST00000574855 SMARCC2Q8TAQ2 1214 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 UBE2Q2Q8WVN8 375 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 C1orf159Q96HA4 380 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 POLR3GLQ9BT43 218 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 LUC7LQ9NQ29 371 aaKnown RBP4.91□□□□□ -1.62
NUP88-209ENST00000574855 PALD1Q9ULE6 856 aa4.91□□□□□ -1.62
NUP88-209ENST00000574855 HGSO14964 777 aaPredicted RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 PRODHO43272 600 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 DLX3O60479 287 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 DGKIO75912 1065 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 FGFR1P11362 822 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 KCNC1P48547 511 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 LCE4AQ5TA78 99 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 CD300LDQ6UXZ3 194 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 ZC3H18Q86VM9 953 aaKnown RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 NLRP10Q86W26 655 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 TP53I13Q8NBR0 393 aaPredicted RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 ZNF669Q96BR6 464 aaPredicted RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 DDX11Q96FC9 970 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 C20orf173Q96LM9 149 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 AARSD1Q9BTE6 412 aaKnown RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 XYLT2Q9H1B5 865 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 NGRNQ9NPE2 291 aaKnown RBP4.9□□□□□ -1.63
NUP88-209ENST00000574855 GPR27Q9NS67 375 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 CLDND1Q9NY35 253 aa4.9□□□□□ -1.63
NUP88-209ENST00000574855 TRAV20A0A0B4J274 112 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 SH3D21A4FU49 640 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 OTOL1A6NHN0 477 aaPredicted RBP4.89□□□□□ -1.63
NUP88-209ENST00000574855 PABPC1P11940 636 aaKnown RBP4.89□□□□□ -1.63
NUP88-209ENST00000574855 SLURP1P55000 103 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 VWA3BQ502W6 1294 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 NBPF6Q5VWK0 638 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 STEAP3Q658P3 488 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 RSPO2Q6UXX9 243 aaPredicted RBP4.89□□□□□ -1.63
NUP88-209ENST00000574855 NSMFQ6X4W1 530 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 TTLL7Q6ZT98 887 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 USP53Q70EK8 1073 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 MIB1Q86YT6 1006 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 ZDHHC14Q8IZN3 488 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 FEZF2Q8TBJ5 459 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 ZNF526Q8TF50 670 aaPredicted RBP4.89□□□□□ -1.63
NUP88-209ENST00000574855 DCAF4Q8WV16 495 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 RELTQ969Z4 430 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 ZBTB8AQ96BR9 441 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 NBPF4Q96M43 638 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms