RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	PPP1R9A	Q9ULJ8	1098 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	EXOC3	O60645	756 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	CYP2B6	P20813	491 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	USP11	P51784	963 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	CTTN	Q14247	550 aa	Known RBP	11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	TTLL4	Q14679	1199 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	MTERF2	Q49AM1	385 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ODR4	Q5SWX8	454 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ZBTB8OS	Q8IWT0	167 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	GMCL1P1	Q8NEA9	526 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	RAET1E	Q8TD07	263 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PHF20	Q9BVI0	1012 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	TBC1D22B	Q9NU19	505 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PANK4	Q9NVE7	773 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PCDHB13	Q9Y5F0	798 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	KIF28P	B7ZC32	967 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ARHGAP29	Q52LW3	1261 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	FAM26F	Q5R3K3	315 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	POTED	Q86YR6	584 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	C7orf43	Q8WVR3	580 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ZNF215	Q9UL58	517 aa	Predicted RBP	11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ITGB4	P16144	1822 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	ASTN2	O75129	1339 aa	Predicted RBP	11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	FAM205C	A6NFA0	338 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	NR3C2	P08235	984 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PTPRE	P23469	700 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PPAT	Q06203	517 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	TBC1D8B	Q0IIM8	1120 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	NEDD9	Q14511	834 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166		Q3C1V9	767 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	SMC1B	Q8NDV3	1235 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	CCDC102A	Q96A19	550 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	IWS1	Q96ST2	819 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	CUEDC2	Q9H467	287 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166	PCDHA5	Q9Y5H7	936 aa		11.23	□□□□□ -0.61
SMG6-213	ENST00000573166		K7ENM7	598 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	CALU	O43852	315 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	PLCG1	P19174	1290 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	CA8	P35219	290 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	NLRP12	P59046	1061 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	RPS6	P62753	249 aa	Known RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	MFSD14C	Q5VZR4	134 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	RASGRP2	Q7LDG7	609 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	JPH2	Q9BR39	696 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	SLC39A2	Q9NP94	309 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	NMRK2	Q9NPI5	230 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	NFE2L3	Q9Y4A8	694 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	SYNRG	Q9UMZ2	1314 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	ZEB2	O60315	1214 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	ICAM1	P05362	532 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	MYOCD	Q8IZQ8	938 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	RDH13	Q8NBN7	331 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	CHST13	Q8NET6	341 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	NBPF3	Q9H094	633 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	BHMT2	Q9H2M3	363 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	ZSWIM4	Q9H7M6	989 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	C5	P01031	1676 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	WDR64	B1ANS9	1081 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	TNNT3	P45378	269 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	KRT76	Q01546	638 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	CACNB1	Q02641	598 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	UBXN1	Q04323	297 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	DMP1	Q13316	513 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	MCM6	Q14566	821 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	TRMT44	Q8IYL2	757 aa	Known RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	GIMAP8	Q8ND71	665 aa	Predicted RBP	11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	ZMYND12	Q9H0C1	365 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	STK17A	Q9UEE5	414 aa		11.22	□□□□□ -0.61
SMG6-213	ENST00000573166	LTBP3	Q9NS15	1303 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166		A0A087WWV3	80 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	IRF6	O14896	467 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	SLFN14	P0C7P3	912 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	SSR1	P43307	286 aa	Known RBP	11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	GCLC	P48506	637 aa	Predicted RBP	11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	NBPF11	Q86T75	865 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	MAGEF1	Q9HAY2	307 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	IFNK	Q9P0W0	207 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	AKT3	Q9Y243	479 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	ARFGEF2	Q9Y6D5	1785 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	DES	P17661	470 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	RETREG2	Q8NC44	543 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	CAGE1	Q8TC20	777 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	GPT2	Q8TD30	523 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	PIGO	Q8TEQ8	1089 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	NELFB	Q8WX92	580 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	NOC4L	Q9BVI4	516 aa	Known RBP	11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	DISC1	Q9NRI5	854 aa		11.21	□□□□□ -0.61
SMG6-213	ENST00000573166	TBC1D12	O60347	775 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	RPN1	P04843	607 aa	Known RBP	11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	TXN	P10599	105 aa	Known RBP	11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	JAK3	P52333	1124 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	ZNF280A	P59817	542 aa	Predicted RBP	11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	HERVK_113	P62684	666 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	GRAMD1C	Q8IYS0	662 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	VPS16	Q9H269	839 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	CPA4	Q9UI42	421 aa		11.21	□□□□□ -0.62
SMG6-213	ENST00000573166	SPDYE4	A6NLX3	237 aa		11.2	□□□□□ -0.62
SMG6-213	ENST00000573166	PDHX	O00330	501 aa		11.2	□□□□□ -0.62
SMG6-213	ENST00000573166	GSDMD	P57764	484 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms