RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 TRIM43Q96BQ3 446 aaPredicted RBP16.68■□□□□ 0.26
COMMD4-225ENST00000569245 TOX2Q96NM4 488 aa16.68■□□□□ 0.26
COMMD4-225ENST00000569245 KLF18A0A0U1RQI7 1052 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 RAG1P15918 1043 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 ITGA7Q13683 1181 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 RTN1Q16799 776 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 LY6KQ17RY6 165 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 Q6ZUG5 572 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 SMARCC2Q8TAQ2 1214 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 BADQ92934 168 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 PDCD2LQ9BRP1 358 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 POLR3EQ9NVU0 708 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 RBM28Q9NW13 759 aaKnown RBP16.67■□□□□ 0.26
COMMD4-225ENST00000569245 BRPF3Q9ULD4 1205 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 MRVI1Q9Y6F6 885 aa16.67■□□□□ 0.26
COMMD4-225ENST00000569245 GOLGA8AA7E2F4 631 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 GOLGA8BA8MQT2 603 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 TLR3O15455 904 aaKnown RBP16.66■□□□□ 0.26
COMMD4-225ENST00000569245 ARIH2O95376 493 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 MCM2P49736 904 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 CDK7P50613 346 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 PSMC6P62333 389 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 FAAP100Q0VG06 881 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 HEATR3Q7Z4Q2 680 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 TDHQ8IZJ6 230 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 FBXL16Q8N461 479 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 PDRG1Q9NUG6 133 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 LCTP09848 1927 aa16.66■□□□□ 0.26
COMMD4-225ENST00000569245 KIAA0355O15063 1070 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 GH1P01241 217 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 CCND2P30279 289 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 CHMP4BP1P59074 171 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 PGM5Q15124 567 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 CCDC62Q6P9F0 684 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 VSIG10LQ86VR7 867 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 PSTPIP2Q9H939 334 aa16.65■□□□□ 0.26
COMMD4-225ENST00000569245 BAZ2BQ9UIF8 2168 aaKnown RBP16.64■□□□□ 0.25
COMMD4-225ENST00000569245 KPNA6O60684 536 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 SLC34A2O95436 690 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 APOBRQ0VD83 1088 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 BECN1Q14457 450 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 USP17L6PQ6QN14 398 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 IL31RAQ8NI17 732 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 AFG1LQ8WV93 481 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 BRF1Q92994 677 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 ZFP91Q96JP5 570 aaPredicted RBP16.64■□□□□ 0.25
COMMD4-225ENST00000569245 MTG1Q9BT17 334 aaPredicted RBP16.64■□□□□ 0.25
COMMD4-225ENST00000569245 SEZ6LQ9BYH1 1024 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 AGXT2Q9BYV1 514 aa16.64■□□□□ 0.25
COMMD4-225ENST00000569245 DDX41Q9UJV9 622 aaKnown RBP16.64■□□□□ 0.25
COMMD4-225ENST00000569245 LRRC37A2A6NM11 1700 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 A6NJR5 290 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 CD2BP2O95400 341 aaKnown RBP16.63■□□□□ 0.25
COMMD4-225ENST00000569245 ITGB8P26012 769 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 METAP2P50579 478 aaKnown RBP eCLIP16.63■□□□□ 0.25
COMMD4-225ENST00000569245 AK2P54819 239 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 PURAQ00577 322 aaKnown RBP16.63■□□□□ 0.25
COMMD4-225ENST00000569245 ANKRD1Q15327 319 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 FAM47CQ5HY64 1035 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 KCNV1Q6PIU1 500 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 HSCBQ8IWL3 235 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 FAM126BQ8IXS8 530 aa16.63■□□□□ 0.25
COMMD4-225ENST00000569245 DHX37Q8IY37 1157 aaKnown RBP16.63■□□□□ 0.25
COMMD4-225ENST00000569245 V9GY48 417 aaPredicted RBP16.63■□□□□ 0.25
COMMD4-225ENST00000569245 CCDC196A0A1B0GTZ2 297 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 SORBS3O60504 671 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 TIMP1P01033 207 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 ARHGAP1Q07960 439 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 LAMC2Q13753 1193 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 SLC43A3Q8NBI5 491 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 GPKOWQ92917 476 aaPredicted RBP eCLIP16.62■□□□□ 0.25
COMMD4-225ENST00000569245 TRPV6Q9H1D0 765 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 TBX21Q9UL17 535 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 GRIN2DO15399 1336 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 MYH6P13533 1939 aa16.62■□□□□ 0.25
COMMD4-225ENST00000569245 PIK3CDO00329 1044 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 MEIS2O14770 477 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 ADD1P35611 737 aaKnown RBP16.61■□□□□ 0.25
COMMD4-225ENST00000569245 RCAN1P53805 252 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 NAPAP54920 295 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 FPGSQ05932 587 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 TOB2Q14106 344 aaPredicted RBP16.61■□□□□ 0.25
COMMD4-225ENST00000569245 GNPTABQ3T906 1256 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 IPO9Q96P70 1041 aaKnown RBP16.61■□□□□ 0.25
COMMD4-225ENST00000569245 PPP1R12CQ9BZL4 782 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 RTEL1Q9NZ71 1219 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 CNTNAP5Q8WYK1 1306 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 LAMA3Q16787 3333 aa16.61■□□□□ 0.25
COMMD4-225ENST00000569245 SPDYE3A6NKU9 549 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 K7ELQ4 463 aaPredicted RBP16.6■□□□□ 0.25
COMMD4-225ENST00000569245 SOX1O00570 391 aaPredicted RBP16.6■□□□□ 0.25
COMMD4-225ENST00000569245 STAM2O75886 525 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 RGS20O76081 388 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 CD4P01730 458 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 MMP3P08254 477 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 TGFB3P10600 412 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 CDC27P30260 824 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 DGKDQ16760 1214 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 UBE2SQ16763 222 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 NBPF20Q3BBV1 942 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms