RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 A0A1W2PRQ8 180 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 EYA2O00167 538 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 CDK2AP1O14519 115 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 ENC1O14682 589 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 NPHP1O15259 732 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 PAGE1O75459 146 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 FBXO21O94952 628 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 MAP3K6O95382 1288 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 C6orf222P0C671 652 aaPredicted RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 SELPP16109 830 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 CAPN3P20807 821 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 CALRP27797 417 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 FAM193AP78312 1265 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 APBA1Q02410 837 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 STRN3Q13033 797 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 CHAF1AQ13111 956 aaPredicted RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 PICALMQ13492 652 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 COL9A3Q14050 684 aaPredicted RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 DHCR24Q15392 516 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 PUM3Q15397 648 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 SAFBQ15424 915 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS35-209ENST00000568642 ELF2Q15723 593 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 COBLL1Q53SF7 1204 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 TRIM61Q5EBN2 209 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 FAM209AQ5JX71 171 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 GPATCH4Q5T3I0 446 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 GPR158Q5T848 1215 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 LCE5AQ5TCM9 118 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 LARP1BQ659C4 914 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 TBC1D1Q86TI0 1168 aaPredicted RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 ZBTB46Q86UZ6 589 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 ZSCAN30Q86W11 494 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 SLC41A1Q8IVJ1 513 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 REXO1Q8N1G1 1221 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 PAF1Q8N7H5 531 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 C19orf47Q8N9M1 422 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 OR6P1Q8NGX9 317 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 FRS2Q8WU20 508 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 TP53INP1Q96A56 240 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 XAGE2Q96GT9 111 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 EIF2AK1Q9BQI3 630 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 RUSC1Q9BVN2 902 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 SEZ6LQ9BYH1 1024 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 SMOC1Q9H4F8 434 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 ANTXR1Q9H6X2 564 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 CNNM2Q9H8M5 875 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 EHMT1Q9H9B1 1298 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 VTA1Q9NP79 307 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 RIC8AQ9NPQ8 531 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 ARHGEF4Q9NR80 690 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 LATS2Q9NRM7 1088 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 INTS7Q9NVH2 962 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 IP6K2Q9UHH9 426 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 SALL4Q9UJQ4 1053 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 HDAC9Q9UKV0 1011 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 DNM3Q9UQ16 869 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 USP20Q9Y2K6 914 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 NUB1Q9Y5A7 615 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 PCDHB5Q9Y5E4 795 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 OAS3Q9Y6K5 1087 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 GCC2Q8IWJ2 1684 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 BRCA1P38398 1863 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 SPATA31A1Q5TZJ5 1347 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 WDR33Q9C0J8 1336 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 LTBP3Q9NS15 1303 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 LRPPRCP42704 1394 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 ROBO2Q9HCK4 1378 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 EIF2AK4Q9P2K8 1649 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 TECPR2O15040 1411 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TROQ12816 1431 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 ADAMTS13Q76LX8 1427 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PTPRUQ92729 1446 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 FASNP49327 2511 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 NEMP1O14524 444 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TLR3O15455 904 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 ANP32CO43423 234 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA12O60330 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 CILPO75339 1184 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 MTA2O94776 668 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PRKD3O94806 890 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 BAIAP3O94812 1187 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 VEGFAP15692 232 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 LMNB1P20700 586 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ADH6P28332 368 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 GSTT1P30711 240 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PHKA2P46019 1235 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 CLK1P49759 484 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 NRLP54845 237 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ADGRE1Q14246 886 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 MBTPS1Q14703 1052 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ZNF827Q17R98 1081 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 JAKMIP3Q5VZ66 844 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TSHZ3Q63HK5 1081 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 MZT2BQ6NZ67 158 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 SPOCD1Q6ZMY3 1216 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ARMCX6Q7L4S7 300 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TTC6Q86TZ1 520 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TRIM42Q8IWZ5 723 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 CPA6Q8N4T0 437 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 C1orf127Q8N9H9 656 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms