RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 DNAJC10Q8IXB1 793 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 SMC5Q8IY18 1101 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 CPLX3Q8WVH0 158 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 TMEM40Q8WWA1 233 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 ZNF622Q969S3 477 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS39-209ENST00000568029 MEGF10Q96KG7 1140 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 TAOK3Q9H2K8 898 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 UPF2Q9HAU5 1272 aaKnown RBP7.27□□□□□ -1.25
VPS39-209ENST00000568029 DDX21Q9NR30 783 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS39-209ENST00000568029 PICK1Q9NRD5 415 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 REV1Q9UBZ9 1251 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 TSPYL4Q9UJ04 414 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 CSADQ9Y600 493 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 COL15A1P39059 1388 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 PTPRCP08575 1304 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 CHRNA4P43681 627 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 GSK3AP49840 483 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 USP11P51784 963 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 TAF7Q15545 349 aaPredicted RBP7.26□□□□□ -1.25
VPS39-209ENST00000568029 TNNI3KQ59H18 835 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 CDCP2Q5VXM1 449 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 SLC6A19Q695T7 634 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 SLFN12Q8IYM2 578 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 SMYD4Q8IYR2 804 aaPredicted RBP7.26□□□□□ -1.25
VPS39-209ENST00000568029 IFNL2Q8IZJ0 200 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 TMEM151AQ8N4L1 468 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 C19orf47Q8N9M1 422 aaKnown RBP7.26□□□□□ -1.25
VPS39-209ENST00000568029 ISL2Q96A47 359 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 GCC1Q96CN9 775 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 TM9SF2Q99805 663 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 PCOLCE2Q9UKZ9 415 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 ZBTB1Q9Y2K1 713 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 CORINQ9Y5Q5 1042 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 ABCC4O15439 1325 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 LTBP3Q9NS15 1303 aa7.26□□□□□ -1.25
VPS39-209ENST00000568029 UBR2Q8IWV8 1755 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 IQCA1LA6NCM1 817 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 C1QTNF9BB2RNN3 333 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 H0YIN7 160 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 EIF5BO60841 1220 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 STK10O94804 968 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 HMGB2P26583 209 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 YARSP54577 528 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 MAP7Q14244 749 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 AMOTQ4VCS5 1084 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 PLEKHO1Q53GL0 409 aaPredicted RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 CCDC30Q5VVM6 783 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 INTS3Q68E01 1043 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 CIAPIN1Q6FI81 312 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 DLK2Q6UY11 383 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 CDC37L1Q7L3B6 337 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 FAM20CQ8IXL6 584 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 ARMC10Q8N2F6 343 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 UTP4Q969X6 686 aaKnown RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 ACSF2Q96CM8 615 aaPredicted RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 STK31Q9BXU1 1019 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 ZNF277Q9NRM2 450 aaPredicted RBP7.25□□□□□ -1.25
VPS39-209ENST00000568029 PRKAG3Q9UGI9 489 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 HACL1Q9UJ83 578 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 CENPFP49454 3210 aa7.25□□□□□ -1.25
VPS39-209ENST00000568029 SLC22A31A6NKX4 558 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 HCLS1P14317 486 aaPredicted RBP7.24□□□□□ -1.25
VPS39-209ENST00000568029 CCNFP41002 786 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 CASP7P55210 303 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 NUCB1Q02818 461 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 HABP4Q5JVS0 413 aaKnown RBP7.24□□□□□ -1.25
VPS39-209ENST00000568029 TBC1D9BQ66K14 1250 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 PRR5LQ6MZQ0 368 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 LSRQ86X29 649 aaPredicted RBP7.24□□□□□ -1.25
VPS39-209ENST00000568029 TMEM87BQ96K49 555 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 CNNM2Q9H8M5 875 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 ZNF408Q9H9D4 720 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 TJP2Q9UDY2 1190 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 SNED1Q8TER0 1413 aa7.24□□□□□ -1.25
VPS39-209ENST00000568029 TNFRSF10CO14798 259 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 DHX15O43143 795 aaKnown RBP7.23□□□□□ -1.25
VPS39-209ENST00000568029 IGSF3O75054 1194 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 GDF11O95390 407 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 CST3P01034 146 aaPredicted RBP7.23□□□□□ -1.25
VPS39-209ENST00000568029 GTF2F1P35269 517 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS39-209ENST00000568029 CCT4P50991 539 aaKnown RBP7.23□□□□□ -1.25
VPS39-209ENST00000568029 SLBPQ14493 270 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS39-209ENST00000568029 CDPF1Q6NVV7 123 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 CCDC81Q6ZN84 652 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 CHD1LQ86WJ1 897 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 RPAP2Q8IXW5 612 aaPredicted RBP7.23□□□□□ -1.25
VPS39-209ENST00000568029 SEMA6CQ9H3T2 930 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 FBRSQ9HAH7 460 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 MIS18AQ9NYP9 233 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 NARFQ9UHQ1 456 aa7.23□□□□□ -1.25
VPS39-209ENST00000568029 COL6A3P12111 3177 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 RNGTTO60942 597 aaKnown RBP7.22□□□□□ -1.25
VPS39-209ENST00000568029 LRIG2O94898 1065 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 CYP19A1P11511 503 aaPredicted RBP7.22□□□□□ -1.25
VPS39-209ENST00000568029 BMP3P12645 472 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 MAP4P27816 1152 aaKnown RBP7.22□□□□□ -1.25
VPS39-209ENST00000568029 EPS15P42566 896 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 GATA4P43694 442 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 FXR1P51114 621 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS39-209ENST00000568029 BECN1Q14457 450 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms