RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CCDC148Q8NFR7 591 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 CCDC12Q8WUD4 166 aaPredicted RBP22.4■■□□□ 1.18
CLN3-225ENST00000566824 MPHOSPH6Q99547 160 aaKnown RBP22.4■■□□□ 1.18
CLN3-225ENST00000566824 PHF20Q9BVI0 1012 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 ANO3Q9BYT9 981 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 WDR11Q9BZH6 1224 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 XPNPEP3Q9NQH7 507 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 RTEL1Q9NZ71 1219 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 GNEQ9Y223 722 aaKnown RBP22.4■■□□□ 1.18
CLN3-225ENST00000566824 SYNRGQ9UMZ2 1314 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 SPDYE3A6NKU9 549 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 B4DLN1 442 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 CTAGE5O15320 804 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 MSCO60682 206 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 ADAMTS4O75173 837 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 IQSEC1Q6DN90 963 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 CCDC62Q6P9F0 684 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 UBE2Q1Q7Z7E8 422 aa22.39■■□□□ 1.18
CLN3-225ENST00000566824 REXO1Q8N1G1 1221 aaKnown RBP22.39■■□□□ 1.18
CLN3-225ENST00000566824 LLPHQ9BRT6 129 aaKnown RBP22.39■■□□□ 1.18
CLN3-225ENST00000566824 M0R2N6 131 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 EDIL3O43854 480 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 DUSP11O75319 330 aaKnown RBP22.38■■□□□ 1.17
CLN3-225ENST00000566824 MYCNP04198 464 aaPredicted RBP22.38■■□□□ 1.17
CLN3-225ENST00000566824 SEMA3FQ13275 785 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 LRRC41Q15345 812 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 LY6KQ17RY6 165 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 PCNX4Q63HM2 1172 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 OXER1Q8TDS5 423 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 BCAS3Q9H6U6 928 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 PCDHA4Q9UN74 947 aa22.38■■□□□ 1.17
CLN3-225ENST00000566824 GNA11P29992 359 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 MCM2P49736 904 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 DUSP28Q4G0W2 176 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 BLIDQ8IZY5 108 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 IL27Q8NEV9 243 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 SCFD2Q8WU76 684 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 GLT8D2Q9H1C3 349 aa22.37■■□□□ 1.17
CLN3-225ENST00000566824 UPF3AQ9H1J1 476 aaKnown RBP22.37■■□□□ 1.17
CLN3-225ENST00000566824 DYNC1LI2O43237 492 aaPredicted RBP22.36■■□□□ 1.17
CLN3-225ENST00000566824 FOSP01100 380 aaPredicted RBP22.36■■□□□ 1.17
CLN3-225ENST00000566824 TXNP10599 105 aaKnown RBP22.36■■□□□ 1.17
CLN3-225ENST00000566824 ITGB5P18084 799 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 BEX3Q00994 111 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 SP2Q02086 613 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 AP3B2Q13367 1082 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 IFFO2Q5TF58 517 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 DAGLBQ8NCG7 672 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 CYP2W1Q8TAV3 490 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 CRYGNQ8WXF5 182 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 PAWRQ96IZ0 340 aaKnown RBP22.36■■□□□ 1.17
CLN3-225ENST00000566824 INPP4AQ96PE3 977 aaPredicted RBP22.36■■□□□ 1.17
CLN3-225ENST00000566824 ALPK3Q96L96 1907 aa22.36■■□□□ 1.17
CLN3-225ENST00000566824 SORBS3O60504 671 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 FARP2O94887 1054 aaPredicted RBP22.35■■□□□ 1.17
CLN3-225ENST00000566824 SREBF1P36956 1147 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 GJA9P57773 515 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 GUCY1B3Q02153 619 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 TLK2Q86UE8 772 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 KLHDC9Q8NEP7 349 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 WASF1Q92558 559 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 DDX41Q9UJV9 622 aaKnown RBP22.35■■□□□ 1.17
CLN3-225ENST00000566824 UBIAD1Q9Y5Z9 338 aa22.35■■□□□ 1.17
CLN3-225ENST00000566824 MKI67P46013 3256 aaKnown RBP22.35■■□□□ 1.17
CLN3-225ENST00000566824 RGS19P49795 217 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 ARHGAP4P98171 946 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 EARS2Q5JPH6 523 aaKnown RBP22.34■■□□□ 1.17
CLN3-225ENST00000566824 KRT40Q6A162 431 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 CCSAPQ6IQ19 270 aaPredicted RBP22.34■■□□□ 1.17
CLN3-225ENST00000566824 TEX2Q8IWB9 1127 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 BICD2Q8TD16 824 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 MRVI1Q9Y6F6 885 aa22.34■■□□□ 1.17
CLN3-225ENST00000566824 FAM205CA6NFA0 338 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 SPATA31C2B4DYI2 1134 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 C6orf222P0C671 652 aaPredicted RBP22.33■■□□□ 1.17
CLN3-225ENST00000566824 CUL4AQ13619 759 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 TTLL4Q14679 1199 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 XRRA1Q6P2D8 792 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 ANKLE1Q8NAG6 615 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 TELO2Q9Y4R8 837 aa22.33■■□□□ 1.17
CLN3-225ENST00000566824 COL6A1P12109 1028 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 ARHGAP1Q07960 439 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 NR5A1Q13285 461 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 FAM177A1Q8N128 213 aaPredicted RBP22.32■■□□□ 1.16
CLN3-225ENST00000566824 ARRDC4Q8NCT1 418 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 OR6J1Q8NGC5 347 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 EHMT1Q9H9B1 1298 aa22.32■■□□□ 1.16
CLN3-225ENST00000566824 TNRC18O15417 2968 aaPredicted RBP22.32■■□□□ 1.16
CLN3-225ENST00000566824 FAM86B1E9PN63 330 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 DNM1LO00429 736 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 ATP9AO75110 1047 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 MMP1P03956 469 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 FAM86B2P0C5J1 330 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 UBA1P22314 1058 aaKnown RBP22.31■■□□□ 1.16
CLN3-225ENST00000566824 ICAM3P32942 547 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 NKX3-2P78367 333 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 HMGN5P82970 282 aaKnown RBP22.31■■□□□ 1.16
CLN3-225ENST00000566824 KCNA10Q16322 511 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 GALNT17Q6IS24 598 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 TNFRSF25Q93038 417 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms