RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 VSIG10LQ86VR7 867 aa23.97■■□□□ 1.43
CLN3-219ENST00000565778 RAB11FIP4Q86YS3 637 aa23.97■■□□□ 1.43
CLN3-219ENST00000565778 CMTR1Q8N1G2 835 aaKnown RBP23.97■■□□□ 1.43
CLN3-219ENST00000565778 SRBD1Q8N5C6 995 aaKnown RBP23.97■■□□□ 1.43
CLN3-219ENST00000565778 MTMR10Q9NXD2 777 aa23.97■■□□□ 1.43
CLN3-219ENST00000565778 ARHGAP1Q07960 439 aa23.96■■□□□ 1.43
CLN3-219ENST00000565778 DHX37Q8IY37 1157 aaKnown RBP23.96■■□□□ 1.43
CLN3-219ENST00000565778 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.96■■□□□ 1.433e-6■□□□□ 10.1
CLN3-219ENST00000565778 PLEKHA8P1O95397 391 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 NEFLP07196 543 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 ACRP10323 421 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 CASTP20810 708 aaKnown RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 CCND2P30279 289 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 CCL23P55773 120 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 SMAD3P84022 425 aaKnown RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 FAM109BQ6ICB4 259 aaPredicted RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 KCNV1Q6PIU1 500 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 C16orf59Q7L2K0 433 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 CCDC82Q8N4S0 544 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 FANCBQ8NB91 859 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 PPP1R13LQ8WUF5 828 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 ZFP91Q96JP5 570 aaPredicted RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 FAM161BQ96MY7 647 aa23.95■■□□□ 1.42
CLN3-219ENST00000565778 TRMT13Q9NUP7 481 aaKnown RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 BAZ2BQ9UIF8 2168 aaKnown RBP23.95■■□□□ 1.42
CLN3-219ENST00000565778 UMODL1Q5DID0 1318 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 MMP3P08254 477 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 LAMC2Q13753 1193 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 TMEM240Q5SV17 173 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 NFRKBQ6P4R8 1299 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 DHX32Q7L7V1 743 aaKnown RBP23.94■■□□□ 1.42
CLN3-219ENST00000565778 RASEFQ8IZ41 740 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 SMARCC2Q8TAQ2 1214 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 CUL5Q93034 780 aa23.94■■□□□ 1.42
CLN3-219ENST00000565778 NOC4LQ9BVI4 516 aaKnown RBP23.94■■□□□ 1.42
CLN3-219ENST00000565778 CYP2C9P11712 490 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 EXOSC10Q01780 885 aaKnown RBP23.93■■□□□ 1.42
CLN3-219ENST00000565778 KRT32Q14532 448 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 DGKDQ16760 1214 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 TSGA10IPQ3SY00 556 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 ZNF697Q5TEC3 545 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 ZNF365Q70YC5 407 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 SGMS1Q86VZ5 419 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 IL31RAQ8NI17 732 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 IL23AQ9NPF7 189 aa23.93■■□□□ 1.42
CLN3-219ENST00000565778 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.92■■□□□ 1.42
CLN3-219ENST00000565778 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.92■■□□□ 1.42
CLN3-219ENST00000565778 RGS20O76081 388 aa23.92■■□□□ 1.42
CLN3-219ENST00000565778 ADCK5Q3MIX3 580 aa23.92■■□□□ 1.42
CLN3-219ENST00000565778 MICU3Q86XE3 530 aa23.92■■□□□ 1.42
CLN3-219ENST00000565778 TCEANC2Q96MN5 208 aa23.92■■□□□ 1.42
CLN3-219ENST00000565778 hCG_1642624A0A1W2PR95 340 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 SORBS3O60504 671 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 FGBP02675 491 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 TGFB3P10600 412 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 PTPN11Q06124 597 aaPredicted RBP23.91■■□□□ 1.42
CLN3-219ENST00000565778 USP17L6PQ6QN14 398 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 EMID1Q96A84 441 aaPredicted RBP23.91■■□□□ 1.42
CLN3-219ENST00000565778 NOD1Q9Y239 953 aa23.91■■□□□ 1.42
CLN3-219ENST00000565778 PSRC1Q6PGN9 363 aaPredicted RBP23.9■■□□□ 1.42
CLN3-219ENST00000565778 RPUSD2Q8IZ73 545 aaKnown RBP23.9■■□□□ 1.42
CLN3-219ENST00000565778 PPTC7Q8NI37 304 aa23.9■■□□□ 1.42
CLN3-219ENST00000565778 MLXIPQ9HAP2 919 aa23.9■■□□□ 1.42
CLN3-219ENST00000565778 RTEL1Q9NZ71 1219 aa23.9■■□□□ 1.42
CLN3-219ENST00000565778 GGPS1O95749 300 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 HMGB1P09429 215 aaKnown RBP23.89■■□□□ 1.41
CLN3-219ENST00000565778 CELF3Q5SZQ8 465 aaKnown RBP23.89■■□□□ 1.41
CLN3-219ENST00000565778 MYSM1Q5VVJ2 828 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 TMTC3Q6ZXV5 915 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 SCLYQ96I15 445 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 SPATA33Q96N06 139 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 WNT8AQ9H1J5 351 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 SEMA6BQ9H3T3 888 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 PSTPIP2Q9H939 334 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 STXBP5LQ9Y2K9 1186 aa23.89■■□□□ 1.41
CLN3-219ENST00000565778 MEIS2O14770 477 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 STAM2O75886 525 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 MRPS9P82933 396 aaKnown RBP23.88■■□□□ 1.41
CLN3-219ENST00000565778 FGD1P98174 961 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 SP2Q02086 613 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 GNPTABQ3T906 1256 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 APOA5Q6Q788 366 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 RETREG2Q8NC44 543 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 KAT2BQ92831 832 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 GPKOWQ92917 476 aaPredicted RBP eCLIP23.88■■□□□ 1.41
CLN3-219ENST00000565778 ALG1Q9BT22 464 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 RBM28Q9NW13 759 aaKnown RBP23.88■■□□□ 1.41
CLN3-219ENST00000565778 BRPF3Q9ULD4 1205 aa23.88■■□□□ 1.41
CLN3-219ENST00000565778 PIK3CDO00329 1044 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 ZBTB43O43298 467 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 PPFIA4O75335 1185 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 PTGISQ16647 500 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 HSDL1Q3SXM5 330 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 OTOP2Q7RTS6 562 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 C7orf31Q8N865 590 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 KATNAL1Q9BW62 490 aa23.87■■□□□ 1.41
CLN3-219ENST00000565778 MTIF3Q9H2K0 278 aaKnown RBP23.87■■□□□ 1.41
CLN3-219ENST00000565778 NAP1L2Q9ULW6 460 aaPredicted RBP23.87■■□□□ 1.41
CLN3-219ENST00000565778 LAMA2P24043 3122 aaKnown RBP23.87■■□□□ 1.41
CLN3-219ENST00000565778 PSEN2P49810 448 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms