RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 CLIC4Q9Y696 253 aa12.63□□□□□ -0.39
SF3B3-205ENST00000564899 PFASO15067 1338 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 YEATS4O95619 227 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 FOSP01100 380 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-205ENST00000564899 NASPP49321 788 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-205ENST00000564899 HSD17B4P51659 736 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 STK38Q15208 465 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 SF3A1Q15459 793 aaKnown RBP12.62□□□□□ -0.39
SF3B3-205ENST00000564899 NEK8Q86SG6 692 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 RIOX2Q8IUF8 465 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 TMEM87AQ8NBN3 555 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 TBCKQ8TEA7 893 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 TBC1D5Q92609 795 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 SPATC1LQ9H0A9 340 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 ACAD9Q9H845 621 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 CEP131Q9UPN4 1083 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 STXBP5LQ9Y2K9 1186 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 PCDHB6Q9Y5E3 794 aa12.62□□□□□ -0.39
SF3B3-205ENST00000564899 PRPF40AO75400 957 aaKnown RBP12.61□□□□□ -0.39
SF3B3-205ENST00000564899 PTMSP20962 102 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 COPB2P35606 906 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 GCLCP48506 637 aaPredicted RBP12.61□□□□□ -0.39
SF3B3-205ENST00000564899 GHRHRQ02643 423 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 LRIT3Q3SXY7 679 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 NSMFQ6X4W1 530 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 NECAB2Q7Z6G3 386 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 FCHSD1Q86WN1 690 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 SAMD3Q8N6K7 520 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 LINC00301Q8NCQ3 95 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 CHST13Q8NET6 341 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 EHMT1Q9H9B1 1298 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 TXNRD2Q9NNW7 524 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 MAP3K20Q9NYL2 800 aaKnown RBP12.61□□□□□ -0.39
SF3B3-205ENST00000564899 RBPJLQ9UBG7 517 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 FBXO40Q9UH90 709 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 RCOR1Q9UKL0 485 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 ELP1O95163 1332 aa12.61□□□□□ -0.39
SF3B3-205ENST00000564899 WNT7AO00755 349 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 SPTLC2O15270 562 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 SLC25A27O95847 323 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 BMP15O95972 392 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 RPS6P62753 249 aaKnown RBP12.6□□□□□ -0.39
SF3B3-205ENST00000564899 ERVK-9P63128 1117 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 ERVK-24P63145 666 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 PTPAQ15257 358 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 ZNF174Q15697 407 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 LETM2Q2VYF4 491 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 SLC30A10Q6XR72 485 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 RNF207Q6ZRF8 634 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 NCAPG2Q86XI2 1143 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 TDHQ8IZJ6 230 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 KCNG4Q8TDN1 519 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 SYTL5Q8TDW5 730 aaPredicted RBP12.6□□□□□ -0.39
SF3B3-205ENST00000564899 TRIB2Q92519 343 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 GUCD1Q96NT3 240 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 MOV10L1Q9BXT6 1211 aaKnown RBP12.6□□□□□ -0.39
SF3B3-205ENST00000564899 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.6□□□□□ -0.39
SF3B3-205ENST00000564899 LMBRD1Q9NUN5 540 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 GJD2Q9UKL4 321 aa12.6□□□□□ -0.39
SF3B3-205ENST00000564899 CCNT1O60563 726 aaKnown RBP12.59□□□□□ -0.39
SF3B3-205ENST00000564899 ERCC3P19447 782 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 MCM7P33993 719 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 SREBF1P36956 1147 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 ME1P48163 572 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 CCNA1P78396 465 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 ARHGAP4P98171 946 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 BAATQ14032 418 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-205ENST00000564899 SLC39A14Q15043 492 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 GPR153Q6NV75 609 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 GPRC5AQ8NFJ5 357 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 FAM161BQ96MY7 647 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 NAP1L4Q99733 375 aaKnown RBP12.59□□□□□ -0.39
SF3B3-205ENST00000564899 MAF1Q9H063 256 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 COL20A1Q9P218 1284 aa12.59□□□□□ -0.39
SF3B3-205ENST00000564899 MYH15Q9Y2K3 1946 aa12.58□□□□□ -0.39
SF3B3-205ENST00000564899 COL11A1P12107 1806 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 HMGCRP04035 888 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 MARCKSP29966 332 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 ORC2Q13416 577 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 FAM110CQ1W6H9 321 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 Q3C1V9 767 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 SHCBP1Q8NEM2 672 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 UBE2OQ9C0C9 1292 aaKnown RBP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 MROH8Q9H579 483 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 C11orf49Q9H6J7 331 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 A1CFQ9NQ94 594 aaKnown RBP12.58□□□□□ -0.4
SF3B3-205ENST00000564899 MORF4L1Q9UBU8 362 aa12.58□□□□□ -0.4
SF3B3-205ENST00000564899 GOLGA6L4A6NEF3 574 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 NEMFO60524 1076 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 PPP6R2O75170 966 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 GADD45BO75293 160 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-205ENST00000564899 TDP2O95551 362 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 GCFC2P16383 781 aaKnown RBP12.57□□□□□ -0.4
SF3B3-205ENST00000564899 USP11P51784 963 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 UBE2HP62256 183 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 ATP2C1P98194 919 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-205ENST00000564899 MDM2Q00987 491 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-205ENST00000564899 PTGDRQ13258 359 aa12.57□□□□□ -0.4
SF3B3-205ENST00000564899 LRRC26Q2I0M4 334 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms