RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PIK3CDO00329 1044 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 STAM2O75886 525 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 MYCLP12524 364 aaPredicted RBP15.42■□□□□ 0.06
CLK3-216ENST00000564468 ANAPC15P60006 121 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 BEX3Q00994 111 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 PGM5Q15124 567 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 TRIM60Q495X7 471 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 SEPT14Q6ZU15 432 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 Q7L0L9 218 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 PSTPIP2Q9H939 334 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 CNTNAP5Q8WYK1 1306 aa15.42■□□□□ 0.06
CLK3-216ENST00000564468 NID2Q14112 1375 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 DCDC2CA8MYV0 355 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 CTAGE5O15320 804 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 KPNA6O60684 536 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 PPP1R18Q6NYC8 613 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 XRRA1Q6P2D8 792 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 HEATR3Q7Z4Q2 680 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 VSIG10LQ86VR7 867 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 TOX2Q96NM4 488 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 LBHD1Q9BQE6 289 aaPredicted RBP15.41■□□□□ 0.06
CLK3-216ENST00000564468 GLT8D2Q9H1C3 349 aa15.41■□□□□ 0.06
CLK3-216ENST00000564468 V9GY48 417 aaPredicted RBP15.41■□□□□ 0.06
CLK3-216ENST00000564468 hCG_1642624A0A1W2PR95 340 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 TLR3O15455 904 aaKnown RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 GH1P01241 217 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 TGFB3P10600 412 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 CDC27P30260 824 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 ADD1P35611 737 aaKnown RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 EVCP57679 992 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 IRX5P78411 483 aaPredicted RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 AKAP17AQ02040 695 aaKnown RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 TLE2Q04725 743 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 GNPTABQ3T906 1256 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 CCDC62Q6P9F0 684 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 ANKRD33Q7Z3H0 272 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 EHMT1Q9H9B1 1298 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 FAM217BQ9NTX9 383 aaPredicted RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 MRVI1Q9Y6F6 885 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 LAMA2P24043 3122 aaKnown RBP15.4■□□□□ 0.06
CLK3-216ENST00000564468 SCN10AQ9Y5Y9 1956 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 FRMPD4Q14CM0 1322 aa15.4■□□□□ 0.06
CLK3-216ENST00000564468 SPDYE3A6NKU9 549 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 ARVCFO00192 962 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 MEIS2O14770 477 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 PQBP1O60828 265 aaKnown RBP15.39■□□□□ 0.05
CLK3-216ENST00000564468 CLTBP09497 229 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 NAPAP54920 295 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 FUT2Q10981 343 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 TMEM63BQ5T3F8 832 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 USP17L6PQ6QN14 398 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 CXCL17Q6UXB2 119 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 ZNF274Q96GC6 653 aaPredicted RBP15.39■□□□□ 0.05
CLK3-216ENST00000564468 PRDM5Q9NQX1 630 aaPredicted RBP15.39■□□□□ 0.05
CLK3-216ENST00000564468 PDRG1Q9NUG6 133 aa15.39■□□□□ 0.05
CLK3-216ENST00000564468 DDX41Q9UJV9 622 aaKnown RBP15.39■□□□□ 0.05
CLK3-216ENST00000564468 LTBP2Q14767 1821 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 A6NJR5 290 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 ARIH2O95376 493 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 PDIA3P30101 505 aaKnown RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 CDK7P50613 346 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 LAMC2Q13753 1193 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 LY6KQ17RY6 165 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 PCNX4Q63HM2 1172 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 WWC2Q6AWC2 1192 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 FAM109BQ6ICB4 259 aaPredicted RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 CPLX2Q6PUV4 134 aaKnown RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLK3-216ENST00000564468 DHX37Q8IY37 1157 aaKnown RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 CCDC12Q8WUD4 166 aaPredicted RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 GPKOWQ92917 476 aaPredicted RBP eCLIP15.38■□□□□ 0.05
CLK3-216ENST00000564468 MTG1Q9BT17 334 aaPredicted RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 UPF3BQ9BZI7 483 aaKnown RBP15.38■□□□□ 0.05
CLK3-216ENST00000564468 PDLIM7Q9NR12 457 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 BARHL2Q9NY43 387 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 KAT6AQ92794 2004 aa15.38■□□□□ 0.05
CLK3-216ENST00000564468 PRPF3O43395 683 aaKnown RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 FOSP01100 380 aaPredicted RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 MYL3P08590 195 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 SCG2P13521 617 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 ADCY7P51828 1080 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 PURAQ00577 322 aaKnown RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 ITGA7Q13683 1181 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 TOB2Q14106 344 aaPredicted RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 ANKRD1Q15327 319 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 PFKFB3Q16875 520 aaPredicted RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 NLRX1Q86UT6 975 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 SLC43A3Q8NBI5 491 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 COPS5Q92905 334 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 EMID1Q96A84 441 aaPredicted RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 RNF26Q9BY78 433 aaPredicted RBP15.37■□□□□ 0.05
CLK3-216ENST00000564468 RIC8AQ9NPQ8 531 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 TMEM39AQ9NV64 488 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 DOCK5Q9H7D0 1870 aa15.37■□□□□ 0.05
CLK3-216ENST00000564468 VCANP13611 3396 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 SMCO2A6NFE2 343 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 STXBP3O00186 592 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 CPLX1O14810 134 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 KIAA0355O15063 1070 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 IFNAR1P17181 557 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms