RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NLRC5Q86WI3 1866 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 SMARCA5O60264 1052 aaPredicted RBP8.64□□□□□ -1.03
VPS4A-203ENST00000564399 NMT2O60551 498 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 AMHP03971 560 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 CASTP20810 708 aaKnown RBP8.64□□□□□ -1.03
VPS4A-203ENST00000564399 RPS6P62753 249 aaKnown RBP8.64□□□□□ -1.03
VPS4A-203ENST00000564399 ZP2Q05996 745 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 GPM6BQ13491 265 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 TCTN1Q2MV58 587 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 TCEAL5Q5H9L2 206 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 SYDE2Q5VT97 1194 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 ADHFE1Q8IWW8 467 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 C7orf31Q8N865 590 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 BANK1Q8NDB2 785 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 DCAF4Q8WV16 495 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 ANKS1AQ92625 1134 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 PABPC5Q96DU9 382 aaKnown RBP8.64□□□□□ -1.03
VPS4A-203ENST00000564399 CTAGE1Q96RT6 745 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 LRRCC1Q9C099 1032 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 GPCPD1Q9NPB8 672 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 CLDND1Q9NY35 253 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 PRKAG3Q9UGI9 489 aa8.64□□□□□ -1.03
VPS4A-203ENST00000564399 ZFHX2Q9C0A1 2572 aaPredicted RBP8.64□□□□□ -1.03
VPS4A-203ENST00000564399 KAT6AQ92794 2004 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 FRMPD2Q68DX3 1309 aaPredicted RBP8.63□□□□□ -1.03
VPS4A-203ENST00000564399 MYH6P13533 1939 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 RANBP6O60518 1105 aaKnown RBP8.63□□□□□ -1.03
VPS4A-203ENST00000564399 LGR5O75473 907 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 ARIH2O95376 493 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 GH1P01241 217 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 MMP3P08254 477 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 MS4A1P11836 297 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 IRS1P35568 1242 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 RBL2Q08999 1139 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 EPC2Q52LR7 807 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 ZNF618Q5T7W0 954 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS4A-203ENST00000564399 SEPT14Q6ZU15 432 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 SESTD1Q86VW0 696 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 DNERQ8NFT8 737 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 CLEC4DQ8WXI8 215 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 KAT2BQ92831 832 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 GPATCH3Q96I76 525 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 SAMD11Q96NU1 681 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 PHOX2BQ99453 314 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 NSUN3Q9H649 340 aaKnown RBP8.63□□□□□ -1.03
VPS4A-203ENST00000564399 INCENPQ9NQS7 918 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 IL17RBQ9NRM6 502 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 TOMM22Q9NS69 142 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 HDAC6Q9UBN7 1215 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 GTF2IRD1Q9UHL9 959 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 PNMA2Q9UL42 364 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 DDX19BQ9UMR2 479 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 FAM186AA6NE01 2351 aa8.63□□□□□ -1.03
VPS4A-203ENST00000564399 C19orf67A6NJJ6 358 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 RBAK-RBAKDNI3L0D1 243 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 UPP2O95045 317 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 EDNRBP24530 442 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 PSEN2P49810 448 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 CTDSPL2Q05D32 466 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 PTK7Q13308 1070 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 CLUL1Q15846 466 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 DGKDQ16760 1214 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 LY6KQ17RY6 165 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 TSHZ3Q63HK5 1081 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 BTNL9Q6UXG8 535 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 DHX37Q8IY37 1157 aaKnown RBP8.62□□□□□ -1.03
VPS4A-203ENST00000564399 DBF4BQ8NFT6 615 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 YME1L1Q96TA2 773 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 SEC62Q99442 399 aaKnown RBP8.62□□□□□ -1.03
VPS4A-203ENST00000564399 POP1Q99575 1024 aaKnown RBP8.62□□□□□ -1.03
VPS4A-203ENST00000564399 ZBTB40Q9NUA8 1239 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 MUTYHQ9UIF7 546 aa8.62□□□□□ -1.03
VPS4A-203ENST00000564399 EMSYQ7Z589 1322 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 H3BNC9 293 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 CCER2I3L3R5 266 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 NCK2O43639 380 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 ST18O60284 1047 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 PTPN5P54829 565 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 HTRA4P83105 476 aaPredicted RBP8.61□□□□□ -1.03
VPS4A-203ENST00000564399 ZNF200P98182 395 aaPredicted RBP8.61□□□□□ -1.03
VPS4A-203ENST00000564399 ARHGAP1Q07960 439 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 MBTPS1Q14703 1052 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 MFSD10Q14728 455 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 KIAA0753Q2KHM9 967 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 USH1GQ495M9 461 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 CCDC62Q6P9F0 684 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 RPAINQ86UA6 219 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 TMEM192Q8IY95 271 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 SP7Q8TDD2 431 aaPredicted RBP8.61□□□□□ -1.03
VPS4A-203ENST00000564399 KATNAL1Q9BW62 490 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 CHMP4BQ9H444 224 aaKnown RBP8.61□□□□□ -1.03
VPS4A-203ENST00000564399 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS4A-203ENST00000564399 WDFY4Q6ZS81 3184 aa8.61□□□□□ -1.03
VPS4A-203ENST00000564399 TRIOO75962 3097 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 RALGAPA2Q2PPJ7 1873 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 RSPH10B2B2RC85 870 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 RSPH10BP0C881 870 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 ZNF286BP0CG31 522 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 TOP1P11387 765 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms