RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TACR1P25103 407 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 CDR1P51861 262 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 NCKAP1LP55160 1127 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 MYBPC2Q14324 1141 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 PLEKHN1Q494U1 663 aaPredicted RBP6.44□□□□□ -1.38
VPS35-205ENST00000563984 MRM1Q6IN84 353 aaKnown RBP6.44□□□□□ -1.38
VPS35-205ENST00000563984 IQCEQ6IPM2 695 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 MZB1Q8WU39 189 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 CCDC140Q96MF4 163 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 CLEC1BQ9P126 229 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 NOP58Q9Y2X3 529 aaKnown RBP6.44□□□□□ -1.38
VPS35-205ENST00000563984 ANKRD62A6NC57 917 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 AGRPO00253 132 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 CPP00450 1065 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 GLI4P10075 376 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 PLS3P13797 630 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 HSP90AA2PQ14568 343 aaPredicted RBP6.43□□□□□ -1.38
VPS35-205ENST00000563984 NAALADL2Q58DX5 795 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 E4F1Q66K89 784 aaPredicted RBP6.43□□□□□ -1.38
VPS35-205ENST00000563984 APBB1IPQ7Z5R6 666 aaPredicted RBP6.43□□□□□ -1.38
VPS35-205ENST00000563984 ZNF227Q86WZ6 799 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 TMEM151BQ8IW70 566 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 NME8Q8N427 588 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 HNRNPLLQ8WVV9 542 aaKnown RBP6.43□□□□□ -1.38
VPS35-205ENST00000563984 MTA3Q9BTC8 594 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 GPRC5CQ9NQ84 441 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS35-205ENST00000563984 RWDD3Q9Y3V2 267 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 IRS2Q9Y4H2 1338 aa6.43□□□□□ -1.38
VPS35-205ENST00000563984 F8W031 263 aaPredicted RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 GOLIM4O00461 696 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 IRS4O14654 1257 aaPredicted RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 PPP1R11O60927 126 aaPredicted RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 SCG5P05408 212 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 TARBP2Q15633 366 aaKnown RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 DDR2Q16832 855 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 NETO2Q8NC67 525 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 FRS2Q8WU20 508 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 BTN2A2Q8WVV5 523 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 UBA5Q9GZZ9 404 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 EPB41L4AQ9HCS5 686 aaPredicted RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 DBR1Q9UK59 544 aaKnown RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 NUDT5Q9UKK9 219 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 PCDHA5Q9Y5H7 936 aa6.42□□□□□ -1.38
VPS35-205ENST00000563984 CENPJQ9HC77 1338 aaPredicted RBP6.42□□□□□ -1.38
VPS35-205ENST00000563984 SASH1O94885 1247 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 INSRRP14616 1297 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 PFKLP17858 780 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 AFF3P51826 1226 aaKnown RBP6.41□□□□□ -1.38
VPS35-205ENST00000563984 CYP4F3Q08477 520 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 EFEMP1Q12805 493 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 CC2D1BQ5T0F9 858 aaKnown RBP6.41□□□□□ -1.38
VPS35-205ENST00000563984 WDR78Q5VTH9 848 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 IGDCC3Q8IVU1 814 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 TMEFF1Q8IYR6 380 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 CELF2-AS1Q8N7Q2 184 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 NPLOC4Q8TAT6 608 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 USP33Q8TEY7 942 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 PEX11GQ96HA9 241 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 LGR4Q9BXB1 951 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 ST7Q9NRC1 585 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 GULP1Q9UBP9 304 aa6.41□□□□□ -1.38
VPS35-205ENST00000563984 ZC3H12DA2A288 527 aaKnown RBP6.4□□□□□ -1.38
VPS35-205ENST00000563984 TBX1O43435 398 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 STK10O94804 968 aaKnown RBP6.4□□□□□ -1.38
VPS35-205ENST00000563984 ZBTB7AO95365 584 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 SNRPB2P08579 225 aaKnown RBP6.4□□□□□ -1.38
VPS35-205ENST00000563984 PRR5P85299 388 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 ZNF200P98182 395 aaPredicted RBP6.4□□□□□ -1.38
VPS35-205ENST00000563984 RAB33AQ14088 237 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 SLC9A5Q14940 896 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 SLC10A6Q3KNW5 377 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 LONRF3Q496Y0 759 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 WWC2Q6AWC2 1192 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 SDR16C5Q8N3Y7 309 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS35-205ENST00000563984 FEZF2Q8TBJ5 459 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 MORC4Q8TE76 937 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 TSPAN17Q96FV3 270 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 PRDM4Q9UKN5 801 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 SH3BP1Q9Y3L3 701 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 HCFC2Q9Y5Z7 792 aa6.4□□□□□ -1.38
VPS35-205ENST00000563984 MEFVO15553 781 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 AKAP8O43823 692 aaKnown RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 BUB1BO60566 1050 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 FUCA1P04066 466 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 CAPNS1P04632 268 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 ECI1P42126 302 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 GTF2A2P52657 109 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 GFRA1P56159 465 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 KCNAB2Q13303 367 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 HDAC1Q13547 482 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 TESK1Q15569 626 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 CCDC96Q2M329 555 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 SPATS1Q496A3 300 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 ACBD5Q5T8D3 534 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 MBLAC2Q68D91 279 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 KRBA2Q6ZNG9 492 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 FAM129CQ86XR2 697 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 CKAP2LQ8IYA6 745 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms