RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 KIAA1217Q5T5P2 1943 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 PNMA6FA0A0J9YX94 578 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 RGS20O76081 388 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 FOSL2P15408 326 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 CASTP20810 708 aaKnown RBP19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 RFC2P35250 354 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 PBX2P40425 430 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 LAMC2Q13753 1193 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 KCNV1Q6PIU1 500 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 KAT2BQ92831 832 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 SCLYQ96I15 445 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 PIGSQ96S52 555 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 RBM8AQ9Y5S9 174 aaKnown RBP19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 UNC80Q8N2C7 3258 aa19.98■□□□□ 0.79
VPS9D1-203ENST00000563798 HOXD8P13378 290 aaPredicted RBP19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 SMARCA1P28370 1054 aa19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 FAM47CQ5HY64 1035 aa19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 TMEM67Q5HYA8 995 aa19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 OTOP2Q7RTS6 562 aa19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 CATIPQ7Z7H3 387 aa19.97■□□□□ 0.79
VPS9D1-203ENST00000563798 GCOM1H8Y6P7 765 aaPredicted RBP19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 POLR2MP0CAP2 368 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 TGFB3P10600 412 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 BFSP2Q13515 415 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 PGM5Q15124 567 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 DGKDQ16760 1214 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 CHST3Q7LGC8 479 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 HOMER1Q86YM7 354 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 PPTC7Q8NI37 304 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 CTAGE1Q96RT6 745 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 LSG1Q9H089 658 aaKnown RBP19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 MSRAQ9UJ68 235 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 MRVI1Q9Y6F6 885 aa19.96■□□□□ 0.79
VPS9D1-203ENST00000563798 CHD9Q3L8U1 2897 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 EYSQ5T1H1 3165 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 DDAH1O94760 285 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 IQCF3P0C7M6 154 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 HOXA13P31271 388 aaPredicted RBP19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 RBL2Q08999 1139 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 LY9Q9HBG7 655 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 SLC4A7Q9Y6M7 1214 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 FRMPD4Q14CM0 1322 aa19.95■□□□□ 0.78
VPS9D1-203ENST00000563798 HAS3O00219 553 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 PPFIA4O75335 1185 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 F2P00734 622 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 PTGISQ16647 500 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 MYSM1Q5VVJ2 828 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 DHX37Q8IY37 1157 aaKnown RBP19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 TMTC2Q8N394 836 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 RETREG2Q8NC44 543 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 CAGE1Q8TC20 777 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 SPZ1Q9BXG8 430 aa19.94■□□□□ 0.78
VPS9D1-203ENST00000563798 CUL9Q8IWT3 2517 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 CELF3Q5SZQ8 465 aaKnown RBP19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 GDF6Q6KF10 455 aaPredicted RBP19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 ZNF654Q8IZM8 581 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 CCDC155Q8N6L0 562 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 IL31RAQ8NI17 732 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 AFAP1L1Q8TED9 768 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 PPP1R13LQ8WUF5 828 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 TMEM87BQ96K49 555 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 LZTS2Q9BRK4 669 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 ESYT1Q9BSJ8 1104 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 KATNAL1Q9BW62 490 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 GTF2IRD1Q9UHL9 959 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 YBX2Q9Y2T7 364 aaKnown RBP19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 PCDHA11Q9Y5I1 949 aa19.93■□□□□ 0.78
VPS9D1-203ENST00000563798 STAM2O75886 525 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 MYCLP12524 364 aaPredicted RBP19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 ACTN1P12814 892 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 CCND2P30279 289 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 KIF5BP33176 963 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 MCM5P33992 734 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 LIFRP42702 1097 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 NECTIN1Q15223 517 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 PHOSPHO2Q8TCD6 241 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 NOD1Q9Y239 953 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 TANC1Q9C0D5 1861 aa19.92■□□□□ 0.78
VPS9D1-203ENST00000563798 SH2B2O14492 632 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 SLC27A2O14975 620 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 PRC1O43663 620 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 PARNO95453 639 aaKnown RBP19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 ATP2A2P16615 1042 aaKnown RBP19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 ICAM3P32942 547 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 PSEN2P49810 448 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 GNAQP50148 359 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 SP2Q02086 613 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 CASC1Q6TDU7 716 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 DEFB128Q7Z7B8 93 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 CTCFLQ8NI51 663 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 COL25A1Q9BXS0 654 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 NKX2-4Q9H2Z4 354 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 SLC28A3Q9HAS3 691 aa19.91■□□□□ 0.78
VPS9D1-203ENST00000563798 BAZ2BQ9UIF8 2168 aaKnown RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 PIK3CDO00329 1044 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 UBA1P22314 1058 aaKnown RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 MFSD10Q14728 455 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 GPNMBQ14956 572 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 HSDL1Q3SXM5 330 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 BMP2KLQ5H9B9 411 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms