RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 POLD4Q9HCU8 107 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 A0A0U1RQJ8 604 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 TTC26A0AVF1 554 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 TMEM110-MUSTN1A8MSY1 372 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 GYPCP04921 128 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 FXR1P51114 621 aaKnown RBP eCLIP11.52□□□□□ -0.57
RNF40-204ENST00000563683 SNAP25P60880 206 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 PABPC4Q13310 644 aaKnown RBP eCLIP11.52□□□□□ -0.573e-8■■■■□ 19.4
RNF40-204ENST00000563683 MICALCLQ6ZW33 695 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 FBXO33Q7Z6M2 555 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 MYCT1Q8N699 235 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 ATRIPQ8WXE1 791 aa11.52□□□□□ -0.57
RNF40-204ENST00000563683 ARHGAP25P42331 645 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 ADAM9Q13443 819 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 CDKAL1Q5VV42 579 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 SPATA20Q8TB22 786 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 MEIS1O00470 390 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 GDF11O95390 407 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 EPB41P11171 864 aaKnown RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 MRPS25P82663 173 aaKnown RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 RASSF7Q02833 373 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 ICA1Q05084 483 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 ASIC2Q16515 512 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 KLHL7Q8IXQ5 586 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 CHP1Q99653 195 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 HDAC9Q9UKV0 1011 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 CEP83Q9Y592 693 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 SRGAP2O75044 1071 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 RDXP35241 583 aaKnown RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 APTXQ7Z2E3 356 aaKnown RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 FNBP4Q8N3X1 1017 aaPredicted RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 NAP1L4Q99733 375 aaKnown RBP11.51□□□□□ -0.57
RNF40-204ENST00000563683 DNAJC5Q9H3Z4 198 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 CUEDC2Q9H467 287 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 BARHL2Q9NY43 387 aa11.51□□□□□ -0.57
RNF40-204ENST00000563683 PPEF1O14829 653 aaPredicted RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 EIF3HO15372 352 aaKnown RBP eCLIP11.5□□□□□ -0.574e-7■□□□□ 8.7
RNF40-204ENST00000563683 FCER1AP12319 257 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 ALDH1B1P30837 517 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 UBXN2AP68543 259 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 DPYDQ12882 1025 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 ASPRV1Q53RT3 343 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 RUBCNQ92622 972 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 TMEM60Q9H2L4 133 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 H0YIN7 160 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 APBA3O96018 575 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 ERVK-24P63145 666 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 GPSM2P81274 684 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 GRM4Q14833 912 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 SEC23AQ15436 765 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 KIAA0753Q2KHM9 967 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 RNF187Q5TA31 235 aaPredicted RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 TRIM58Q8NG06 486 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 NHEJ1Q9H9Q4 299 aaPredicted RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 HOMER2Q9NSB8 354 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 FAM184BQ9ULE4 1060 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CNTNAP5Q8WYK1 1306 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L15C9J2P7 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L13C9JLJ4 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L11C9JVI0 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L18D6R9N7 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L22D6RA61 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L17D6RBQ6 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L19D6RCP7 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L20D6RJB6 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CEP104O60308 925 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CD44P16070 742 aaKnown RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 GNGT1P63211 74 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L24Q0WX57 530 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 TRAF1Q13077 416 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CFAP58Q5T655 872 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 USP17L6PQ6QN14 398 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CCNI2Q6ZMN8 369 aaPredicted RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 OTUD6BQ8N6M0 293 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 GJA10Q969M2 543 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 CABS1Q96KC9 395 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 MED15Q96RN5 788 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 GLT8D2Q9H1C3 349 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 DONSONQ9NYP3 566 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 ATXN2Q99700 1313 aaKnown RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 TFRCP02786 760 aaKnown RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 BICD1Q96G01 975 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 SH3GLB2Q9NR46 395 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 ARMCX3Q9UH62 379 aaPredicted RBP11.5□□□□□ -0.57
RNF40-204ENST00000563683 PCDHA6Q9UN73 950 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 PCDHA8Q9Y5H6 950 aa11.5□□□□□ -0.57
RNF40-204ENST00000563683 TCP10L2B9ZVM9 353 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 FOXP2O15409 715 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 TDP2O95551 362 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 GPATCH4Q5T3I0 446 aaKnown RBP11.49□□□□□ -0.57
RNF40-204ENST00000563683 PAPD7Q5XG87 772 aaKnown RBP11.49□□□□□ -0.57
RNF40-204ENST00000563683 FBXO11Q86XK2 927 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 CNPY4Q8N129 248 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 GIMAP7Q8NHV1 300 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 TRIM31Q9BZY9 425 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 NDST4Q9H3R1 872 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 LIMA1Q9UHB6 759 aaKnown RBP11.49□□□□□ -0.57
RNF40-204ENST00000563683 FRMD4BQ9Y2L6 1034 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 LTN1O94822 1766 aa11.49□□□□□ -0.57
RNF40-204ENST00000563683 ZBED6P86452 979 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms