RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CCDC148Q8NFR7 591 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 NSUN6Q8TEA1 469 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 COPS5Q92905 334 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 MAF1Q9H063 256 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 BCAS3Q9H6U6 928 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 C6orf50Q9HD87 102 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 MAP3K20Q9NYL2 800 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 ADD3Q9UEY8 706 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 TELO2Q9Y4R8 837 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 MYADML2A6NDP7 307 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 ASB14A6NK59 587 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 KIF28PB7ZC32 967 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 MMP1P03956 469 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 SMPD1P17405 629 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 PDE4DQ08499 809 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 SEPT14Q6ZU15 432 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 VSIG10LQ86VR7 867 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 IL27Q8NEV9 243 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 CYP2W1Q8TAV3 490 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 DEFB118Q96PH6 123 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 RNF208Q9H0X6 261 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 ABHD16BQ9H3Z7 469 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 HMX1Q9NP08 348 aaPredicted RBP11.21□□□□□ -0.61
CLK3-208ENST00000562626 RTEL1Q9NZ71 1219 aa11.21□□□□□ -0.61
CLK3-208ENST00000562626 EVPLQ92817 2033 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 RBM47A0AV96 593 aaKnown RBP11.2□□□□□ -0.62
CLK3-208ENST00000562626 SPDYE3A6NKU9 549 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 BTBD18B2RXH4 712 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 CTAGE5O15320 804 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 SEPT4O43236 478 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 ITGB5P18084 799 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 CNGA1P29973 690 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 SREBF1P36956 1147 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
CLK3-208ENST00000562626 HMGN5P82970 282 aaKnown RBP11.2□□□□□ -0.62
CLK3-208ENST00000562626 SP2Q02086 613 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 PCNX4Q63HM2 1172 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 SPRYD3Q8NCJ5 442 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 SLC17A8Q8NDX2 589 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 FBXO18Q8NFZ0 1043 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 CCDC12Q8WUD4 166 aaPredicted RBP11.2□□□□□ -0.62
CLK3-208ENST00000562626 C8orf76Q96K31 380 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 UIMC1Q96RL1 719 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 IWS1Q96ST2 819 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 VTA1Q9NP79 307 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 DDX20Q9UHI6 824 aaKnown RBP11.2□□□□□ -0.62
CLK3-208ENST00000562626 CNPY2Q9Y2B0 182 aa11.2□□□□□ -0.62
CLK3-208ENST00000562626 DNAH12Q6ZR08 3092 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 LOC102724159A0A0B4J2E5 919 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 FAM86B1E9PN63 330 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 SORBS3O60504 671 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 FAM86B2P0C5J1 330 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 EN2P19622 333 aaPredicted RBP11.19□□□□□ -0.62
CLK3-208ENST00000562626 GNA11P29992 359 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 CCND2P30279 289 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 ARHGAP4P98171 946 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 AP3B2Q13367 1082 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 PWP2Q15269 919 aaKnown RBP11.19□□□□□ -0.62
CLK3-208ENST00000562626 STXBP2Q15833 593 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 CCDC62Q6P9F0 684 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 HSCBQ8IWL3 235 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 DIS3L2Q8IYB7 885 aaKnown RBP11.19□□□□□ -0.62
CLK3-208ENST00000562626 U2AF1L4Q8WU68 220 aaKnown RBP11.19□□□□□ -0.62
CLK3-208ENST00000562626 WASF1Q92558 559 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 WDR11Q9BZH6 1224 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 SMC3Q9UQE7 1217 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 GNEQ9Y223 722 aaKnown RBP11.19□□□□□ -0.62
CLK3-208ENST00000562626 UBIAD1Q9Y5Z9 338 aa11.19□□□□□ -0.62
CLK3-208ENST00000562626 SYNRGQ9UMZ2 1314 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 IGLV3-22A0A075B6J6 115 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 ATP9AO75110 1047 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 ADAMTS4O75173 837 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 EIF3JO75822 258 aaKnown RBP11.18□□□□□ -0.62
CLK3-208ENST00000562626 SGPL1O95470 568 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 TDP2O95551 362 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 PGK1P00558 417 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 GJB1P08034 283 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 ARP10275 920 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 AKR1A1P14550 325 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 KRT2P35908 639 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 LY6KQ17RY6 165 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 INF2Q27J81 1249 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 PIK3AP1Q6ZUJ8 805 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 FAM184AQ8NB25 1140 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 TBCKQ8TEA7 893 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 DIS3LQ8TF46 1054 aaKnown RBP11.18□□□□□ -0.62
CLK3-208ENST00000562626 GJA10Q969M2 543 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 LENG9Q96B70 501 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 INPP4AQ96PE3 977 aaPredicted RBP11.18□□□□□ -0.62
CLK3-208ENST00000562626 CRISPLD2Q9H0B8 497 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 PKD2L1Q9P0L9 805 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 NRBP1Q9UHY1 535 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 DDX41Q9UJV9 622 aaKnown RBP11.18□□□□□ -0.62
CLK3-208ENST00000562626 SIP14410 1827 aa11.18□□□□□ -0.62
CLK3-208ENST00000562626 FOSP01100 380 aaPredicted RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 CYP3A4P08684 503 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 UBA1P22314 1058 aaKnown RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 GJA8P48165 433 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 BEX3Q00994 111 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 TNFAIP2Q03169 654 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms