RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 CCL23P55773 120 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 PGM5Q15124 567 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 NBPF20Q3BBV1 942 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 ZNF697Q5TEC3 545 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 RAB11FIP4Q86YS3 637 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 TMTC2Q8N394 836 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 TMEM199Q8N511 208 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 MAP3K14Q99558 947 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 MTA3Q9BTC8 594 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 SPZ1Q9BXG8 430 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 DDX41Q9UJV9 622 aaKnown RBP18.49■□□□□ 0.55
LMX1B-204ENST00000561065 FRMPD4Q14CM0 1322 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 GH1P01241 217 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 MCM5P33992 734 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 CMTR1Q8N1G2 835 aaKnown RBP18.49■□□□□ 0.55
LMX1B-204ENST00000561065 PRUNE2Q8WUY3 3088 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 ZFP91Q96JP5 570 aaPredicted RBP18.49■□□□□ 0.55
LMX1B-204ENST00000561065 TMEM87BQ96K49 555 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 SEZ6LQ9BYH1 1024 aa18.49■□□□□ 0.55
LMX1B-204ENST00000561065 TRIP12Q14669 1992 aaPredicted RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 EIF3JO75822 258 aaKnown RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 MYCLP12524 364 aaPredicted RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 TRAF1Q13077 416 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 ZNF365Q70YC5 407 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 SRBD1Q8N5C6 995 aaKnown RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 CTCFLQ8NI51 663 aaPredicted RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 KAT2BQ92831 832 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 GPKOWQ92917 476 aaPredicted RBP eCLIP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 SCLYQ96I15 445 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 CTAGE1Q96RT6 745 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 IL23AQ9NPF7 189 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 MAP3K20Q9NYL2 800 aaKnown RBP18.48■□□□□ 0.55
LMX1B-204ENST00000561065 MRVI1Q9Y6F6 885 aa18.48■□□□□ 0.55
LMX1B-204ENST00000561065 TET1Q8NFU7 2136 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 CHD7Q9P2D1 2997 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 GCOM1H8Y6P7 765 aaPredicted RBP18.47■□□□□ 0.55
LMX1B-204ENST00000561065 RBAK-RBAKDNI3L0D1 243 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 POLR2MP0CAP2 368 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 LIFRP42702 1097 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 BRDTQ58F21 947 aaPredicted RBP18.47■□□□□ 0.55
LMX1B-204ENST00000561065 FAM47CQ5HY64 1035 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 NFRKBQ6P4R8 1299 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 PSRC1Q6PGN9 363 aaPredicted RBP18.47■□□□□ 0.55
LMX1B-204ENST00000561065 VSIG10LQ86VR7 867 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 FCHSD1Q86WN1 690 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 RASEFQ8IZ41 740 aa18.47■□□□□ 0.55
LMX1B-204ENST00000561065 EMID1Q96A84 441 aaPredicted RBP18.47■□□□□ 0.55
LMX1B-204ENST00000561065 CXXC1Q9P0U4 656 aaPredicted RBP18.47■□□□□ 0.55
LMX1B-204ENST00000561065 PTPRSQ13332 1948 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 GRXCR1A8MXD5 290 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 SORBS3O60504 671 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 KPNA6O60684 536 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 DNAJB2P25686 324 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 KIF5BP33176 963 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 NFXL1Q6ZNB6 911 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 SAMD3Q8N6K7 520 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 TCEANC2Q96MN5 208 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 SEMA6BQ9H3T3 888 aa18.46■□□□□ 0.55
LMX1B-204ENST00000561065 A0A0C4DFX4 3053 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 CCDC69A6NI79 296 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 ZNF286BP0CG31 522 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 UBA1P22314 1058 aaKnown RBP18.45■□□□□ 0.54
LMX1B-204ENST00000561065 PBX2P40425 430 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 MRPS9P82933 396 aaKnown RBP18.45■□□□□ 0.54
LMX1B-204ENST00000561065 SP2Q02086 613 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 ADCK5Q3MIX3 580 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 SGMS1Q86VZ5 419 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 HERVK_113Q902F9 699 aa18.45■□□□□ 0.54
LMX1B-204ENST00000561065 CDX2Q99626 313 aaPredicted RBP18.45■□□□□ 0.54
LMX1B-204ENST00000561065 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.44■□□□□ 0.54
LMX1B-204ENST00000561065 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.44■□□□□ 0.54
LMX1B-204ENST00000561065 hCG_1642624A0A1W2PR95 340 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 EIF5BO60841 1220 aaKnown RBP18.44■□□□□ 0.54
LMX1B-204ENST00000561065 HOXD8P13378 290 aaPredicted RBP18.44■□□□□ 0.54
LMX1B-204ENST00000561065 SMARCA1P28370 1054 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 CCND2P30279 289 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 SEMA3FQ13275 785 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 KRT32Q14532 448 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 USP17L6PQ6QN14 398 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 TMTC3Q6ZXV5 915 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 MICU3Q86XE3 530 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 PPTC7Q8NI37 304 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 RRP36Q96EU6 259 aaKnown RBP18.44■□□□□ 0.54
LMX1B-204ENST00000561065 BCAS3Q9H6U6 928 aa18.44■□□□□ 0.54
LMX1B-204ENST00000561065 MEIS2O14770 477 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 REC8O95072 547 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 GGPS1O95749 300 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 F2P00734 622 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 SUPT20HL2P0C7V6 817 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 CHMP4BP1P59074 171 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 PTPN11Q06124 597 aaPredicted RBP18.43■□□□□ 0.54
LMX1B-204ENST00000561065 HSDL1Q3SXM5 330 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 MYSM1Q5VVJ2 828 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 GDF6Q6KF10 455 aaPredicted RBP18.43■□□□□ 0.54
LMX1B-204ENST00000561065 OTOP2Q7RTS6 562 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 SESTD1Q86VW0 696 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 PBX4Q9BYU1 374 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 CNTNAP5Q8WYK1 1306 aa18.43■□□□□ 0.54
LMX1B-204ENST00000561065 TMEM265A0A087WTH1 108 aa18.42■□□□□ 0.54
LMX1B-204ENST00000561065 HAS3O00219 553 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms