RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 GPHNQ9NQX3 736 aaPredicted RBP16.26■□□□□ 0.19
LDLR-213ENST00000560502 COL4A4P53420 1690 aaPredicted RBP16.25■□□□□ 0.19
LDLR-213ENST00000560502 IQCF3P0C7M6 154 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 GOLGA8HP0CJ92 632 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 TXNP10599 105 aaKnown RBP16.25■□□□□ 0.19
LDLR-213ENST00000560502 NEK4P51957 841 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 MRPS5P82675 430 aaKnown RBP16.25■□□□□ 0.19
LDLR-213ENST00000560502 FAM47CQ5HY64 1035 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 CCDC62Q6P9F0 684 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 DEFB128Q7Z7B8 93 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 DGKHQ86XP1 1220 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 ADAMTS19Q8TE59 1207 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 PPP1R13LQ8WUF5 828 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 CPVLQ9H3G5 476 aa16.25■□□□□ 0.19
LDLR-213ENST00000560502 RNF41Q9H4P4 317 aaPredicted RBP16.25■□□□□ 0.19
LDLR-213ENST00000560502 TCF20Q9UGU0 1960 aaKnown RBP16.24■□□□□ 0.19
LDLR-213ENST00000560502 B4DLN1 442 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 HMGB1P09429 215 aaKnown RBP16.24■□□□□ 0.19
LDLR-213ENST00000560502 ACTN1P12814 892 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 POU3F3P20264 500 aaPredicted RBP16.24■□□□□ 0.19
LDLR-213ENST00000560502 NT5C2P49902 561 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 MRPL12P52815 198 aaKnown RBP16.24■□□□□ 0.19
LDLR-213ENST00000560502 CDC37Q16543 378 aaPredicted RBP16.24■□□□□ 0.19
LDLR-213ENST00000560502 USH1GQ495M9 461 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 ANKS1AQ92625 1134 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 ESR2Q92731 530 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 CTAGE1Q96RT6 745 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 SLC9A7Q96T83 725 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 ZKSCAN3Q9BRR0 538 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 ZSWIM6Q9HCJ5 1215 aa16.24■□□□□ 0.19
LDLR-213ENST00000560502 REV3LO60673 3130 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 ABCB11O95342 1321 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 CA3P07451 260 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 ARHGAP1Q07960 439 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 TMEM67Q5HYA8 995 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 SESTD1Q86VW0 696 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 RASEFQ8IZ41 740 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 PHOSPHO2Q8TCD6 241 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 SYTL5Q8TDW5 730 aaPredicted RBP16.23■□□□□ 0.19
LDLR-213ENST00000560502 TBC1D5Q92609 795 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 UBA5Q9GZZ9 404 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 COL20A1Q9P218 1284 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 CYP46A1Q9Y6A2 500 aa16.23■□□□□ 0.19
LDLR-213ENST00000560502 MYH7BA7E2Y1 1941 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 EPOPA6NHQ4 379 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 ARHGEF15O94989 841 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 MMP3P08254 477 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 BFSP2Q13515 415 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 ANKRD1Q15327 319 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 IMMTQ16891 758 aaKnown RBP16.22■□□□□ 0.19
LDLR-213ENST00000560502 RETREG2Q8NC44 543 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 PNMA1Q8ND90 353 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 AFG1LQ8WV93 481 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 JAKMIP1Q96N16 626 aaKnown RBP16.22■□□□□ 0.19
LDLR-213ENST00000560502 TAAR1Q96RJ0 339 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 BRWD1Q9NSI6 2320 aa16.22■□□□□ 0.19
LDLR-213ENST00000560502 KDM4AO75164 1064 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 BAIAP3O94812 1187 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 CASTP20810 708 aaKnown RBP16.21■□□□□ 0.19
LDLR-213ENST00000560502 RBL2Q08999 1139 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 CCDC178Q5BJE1 867 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 BLOC1S2Q6QNY1 142 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 RUFY3Q7L099 469 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 HERC6Q8IVU3 1022 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 ADGRF4Q8IZF3 695 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 KAT2BQ92831 832 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 UHRF1Q96T88 793 aaPredicted RBP16.21■□□□□ 0.19
LDLR-213ENST00000560502 MTCH2Q9Y6C9 303 aa16.21■□□□□ 0.19
LDLR-213ENST00000560502 RFXAPO00287 272 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 ZNF213O14771 459 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 CD2BP2O95400 341 aaKnown RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 GH1P01241 217 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 CYP21A2P08686 494 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 BMP1P13497 986 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 TAP1Q03518 808 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 GPNMBQ14956 572 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 PTGISQ16647 500 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 QRICH1Q2TAL8 776 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 ASPRV1Q53RT3 343 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 GDF6Q6KF10 455 aaPredicted RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 IQCA1Q86XH1 822 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 ENAHQ8N8S7 591 aaPredicted RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 CAGE1Q8TC20 777 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 NSUN6Q8TEA1 469 aaKnown RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 AFAP1L1Q8TED9 768 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 DHX38Q92620 1227 aaKnown RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 IWS1Q96ST2 819 aa16.2■□□□□ 0.18
LDLR-213ENST00000560502 TSPYL2Q9H2G4 693 aaPredicted RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 CIZ1Q9ULV3 898 aaPredicted RBP16.2■□□□□ 0.18
LDLR-213ENST00000560502 B4E1Z4 1266 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 HSP90AA1P07900 732 aaKnown RBP16.19■□□□□ 0.18
LDLR-213ENST00000560502 GHRHRQ02643 423 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 TFF2Q03403 129 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 LY6KQ17RY6 165 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 SEPT14Q6ZU15 432 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 MCF2L2Q86YR7 1114 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 MICALL1Q8N3F8 863 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 CCDC155Q8N6L0 562 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 EMID1Q96A84 441 aaPredicted RBP16.19■□□□□ 0.18
LDLR-213ENST00000560502 ZSCAN10Q96SZ4 725 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms