RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RASGRP4Q8TDF6 673 aa11.49□□□□□ -0.57
USP3-216ENST00000559873 RNF208Q9H0X6 261 aa11.49□□□□□ -0.57
USP3-216ENST00000559873 TMEM260Q9NX78 707 aa11.49□□□□□ -0.57
USP3-216ENST00000559873 DAXXQ9UER7 740 aaPredicted RBP11.49□□□□□ -0.57
USP3-216ENST00000559873 FAM184BQ9ULE4 1060 aa11.49□□□□□ -0.57
USP3-216ENST00000559873 NKRFO15226 690 aaKnown RBP eCLIP11.48□□□□□ -0.576e-7■■□□□ 13.1
USP3-216ENST00000559873 FIBPO43427 364 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 DTNBO60941 627 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 ZNF865P0CJ78 1059 aaPredicted RBP11.48□□□□□ -0.57
USP3-216ENST00000559873 RARBP10826 455 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 CCL5P13501 91 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 TRIM32Q13049 653 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 GPRASP2Q96D09 838 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 SHISA4Q96DD7 197 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 PGBD1Q96JS3 809 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 FOXP1Q9H334 677 aaPredicted RBP11.48□□□□□ -0.57
USP3-216ENST00000559873 SPC25Q9HBM1 224 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 DDX20Q9UHI6 824 aaKnown RBP11.48□□□□□ -0.57
USP3-216ENST00000559873 MRVI1Q9Y6F6 885 aa11.48□□□□□ -0.57
USP3-216ENST00000559873 VPS37CA5D8V6 355 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 M0R2N6 131 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 MAFGO15525 162 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 MYCP01106 439 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 CYP3A4P08684 503 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 TGFB3P10600 412 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 GCFC2P16383 781 aaKnown RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 CCND3P30281 292 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 USP11P51784 963 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 GUCY1B3Q02153 619 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 NPY5RQ15761 445 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 CCDC144BQ3MJ40 725 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 CEP55Q53EZ4 464 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 PRAMEF19Q5SWL8 479 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 MCTP1Q6DN14 999 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 IQSEC1Q6DN90 963 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 MOXD1Q6UVY6 613 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 SEPT14Q6ZU15 432 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 PIK3AP1Q6ZUJ8 805 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 NEK8Q86SG6 692 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 GIMAP8Q8ND71 665 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 IL31RAQ8NI17 732 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 TBCKQ8TEA7 893 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 INPP4AQ96PE3 977 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 KATNBL1Q9H079 304 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 UNC93B1Q9H1C4 597 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 PAK6Q9NQU5 681 aaPredicted RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 GJB4Q9NTQ9 266 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 FOXD4L1Q9NU39 408 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 TCEAL9Q9UHQ7 104 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
USP3-216ENST00000559873 MCM3APO60318 1980 aa11.47□□□□□ -0.57
USP3-216ENST00000559873 RBM47A0AV96 593 aaKnown RBP11.46□□□□□ -0.57
USP3-216ENST00000559873 BTBD18B2RXH4 712 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 GJB1P08034 283 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 TXNP10599 105 aaKnown RBP11.46□□□□□ -0.57
USP3-216ENST00000559873 ICAM3P32942 547 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 TNFAIP2Q03169 654 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 NR5A1Q13285 461 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 MTMR1Q13613 665 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 MTFR1Q15390 333 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 INF2Q27J81 1249 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 BRDTQ58F21 947 aaPredicted RBP11.46□□□□□ -0.57
USP3-216ENST00000559873 TAPT1Q6NXT6 567 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 NIPA1Q7RTP0 329 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 NOSTRINQ8IVI9 506 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 TRPV1Q8NER1 839 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 OXER1Q8TDS5 423 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 ABHD8Q96I13 439 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 DEFB118Q96PH6 123 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 MXRA8Q9BRK3 442 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 WDR11Q9BZH6 1224 aa11.46□□□□□ -0.57
USP3-216ENST00000559873 HTTP42858 3142 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 DUSP11O75319 330 aaKnown RBP11.45□□□□□ -0.58
USP3-216ENST00000559873 GH1P01241 217 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 CIITAP33076 1130 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 TRAPPC10P48553 1259 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 MRPS9P82933 396 aaKnown RBP11.45□□□□□ -0.58
USP3-216ENST00000559873 ORC2Q13416 577 aaPredicted RBP11.45□□□□□ -0.58
USP3-216ENST00000559873 NEDD9Q14511 834 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 DUSP28Q4G0W2 176 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 BRAPQ7Z569 592 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 TLK2Q86UE8 772 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 U2AF1L4Q8WU68 220 aaKnown RBP11.45□□□□□ -0.58
USP3-216ENST00000559873 CRYGNQ8WXF5 182 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 AP5M1Q9H0R1 490 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 JADE2Q9NQC1 790 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 XPNPEP3Q9NQH7 507 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 Q9Y3F1 56 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 UBIAD1Q9Y5Z9 338 aa11.45□□□□□ -0.58
USP3-216ENST00000559873 DDX49Q9Y6V7 483 aaKnown RBP11.45□□□□□ -0.58
USP3-216ENST00000559873 KIAA0100Q14667 2235 aaKnown RBP11.44□□□□□ -0.58
USP3-216ENST00000559873 STX6O43752 255 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 ITGB5P18084 799 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 SYT1P21579 422 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 UBA1P22314 1058 aaKnown RBP11.44□□□□□ -0.58
USP3-216ENST00000559873 U2AF2P26368 475 aaKnown RBP eCLIP11.44□□□□□ -0.583e-7■■■□□ 18.2
USP3-216ENST00000559873 GJA8P48165 433 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 CPT1AP50416 773 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 LETM2Q2VYF4 491 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms