RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZDHHC15Q96MV8 337 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 C8orf49Q96NF6 230 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CDC6Q99741 560 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 APBA2Q99767 749 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 PRDM14Q9GZV8 571 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.34□□□□□ -2.03
USP3-209ENST00000558925 EPN3Q9H201 632 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TRIT1Q9H3H1 467 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 NOL6Q9H6R4 1146 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 NCOA5Q9HCD5 579 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 CRTAC1Q9NQ79 661 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CGGBP1Q9UFW8 167 aaPredicted RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 FBXL21Q9UKT6 434 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CEP131Q9UPN4 1083 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 AKT3Q9Y243 479 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 NOP58Q9Y2X3 529 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 IQCA1LA6NCM1 817 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 H0Y8X5 98 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 AGRPO00253 132 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NRDCO43847 1150 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 DLX3O60479 287 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 VAMP4O75379 141 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 DNAJC8O75937 253 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 PRAMEF1O95521 474 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 C6orf222P0C671 652 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 PABPC1P11940 636 aaKnown RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 MYCLP1P12525 358 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 ITGA4P13612 1032 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 CTSKP43235 329 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ZNF143P52747 638 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 GFRA1P56159 465 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ANAPC15P60006 121 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ERVFRD-1P60508 538 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 DLX2Q07687 328 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 HSP90AA2PQ14568 343 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 ZNF460Q14592 562 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 CDSNQ15517 529 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NTRK3Q16288 839 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NBPF9Q3BBW0 867 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 GTF2IRD2BQ6EKJ0 949 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 CRTC3Q6UUV7 619 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NSMFQ6X4W1 530 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ZPBP2Q6X784 338 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 LIPIQ6XZB0 460 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 BRAPQ7Z569 592 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 FGD2Q7Z6J4 655 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 GTF2IRD2Q86UP8 949 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NIM1KQ8IY84 436 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 FIBCD1Q8N539 461 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 SLC7A14Q8TBB6 771 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 RNF141Q8WVD5 230 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 SMARCC1Q92922 1105 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 NINJ1Q92982 152 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 MFSD3Q96ES6 412 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 SGSM3Q96HU1 749 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 MCMBPQ9BTE3 642 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 DHRS4Q9BTZ2 278 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 TARS2Q9BW92 718 aaKnown RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 GBP3Q9H0R5 595 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 PCED1AQ9H1Q7 454 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 SLC52A2Q9HAB3 445 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 NDOR1Q9UHB4 597 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ING1Q9UK53 422 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 GPR55Q9Y2T6 319 aaPredicted RBP2.33□□□□□ -2.04
USP3-209ENST00000558925 EMC9Q9Y3B6 208 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 PRKAB1Q9Y478 270 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 TRAF6Q9Y4K3 522 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 PCDHB12Q9Y5F1 795 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 ASXL2Q76L83 1435 aa2.33□□□□□ -2.04
USP3-209ENST00000558925 TMEM82A0PJX8 343 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 GSG1L2A8MUP6 293 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 STXBP3O00186 592 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 CYR61O00622 381 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 PLD2O14939 933 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 KCNQ2O43526 872 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 NOBOXO60393 691 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 PDE8AO60658 829 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 PPM1BO75688 479 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 RASGRP1O95267 797 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 SNRPB2P08579 225 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 VIL1P09327 827 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 NAT2P11245 290 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 FGFR1P11362 822 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 IFNGR1P15260 489 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 PNLIPP16233 465 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 IBSPP21815 317 aaPredicted RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 CNGA1P29973 690 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 STAT3P40763 770 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ETV3P41162 512 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ECI1P42126 302 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 GDF5P43026 501 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 KCNJ6P48051 423 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 CEBPAP49715 358 aaPredicted RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 RNF4P78317 190 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 CAP1Q01518 475 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 DUSP4Q13115 394 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 KLF10Q13118 480 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 FAM50AQ14320 339 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 LONRF2Q1L5Z9 754 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 PLEKHG6Q3KR16 790 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms