RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ATP6V0A2Q9Y487 856 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 COL5A3P25940 1745 aaPredicted RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 ZNF609O15014 1411 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 GOLIM4O00461 696 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 CA12O43570 354 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TSPAN6O43657 245 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TAF5LO75529 589 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 UPP2O95045 317 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 CYP2E1P05181 493 aaPredicted RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 KRT18P05783 430 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 MSX1P28360 303 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 GNALP38405 381 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 NFKB2Q00653 900 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 RASSF7Q02833 373 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 KRT32Q14532 448 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 PPP2R5AQ15172 486 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 RABEP1Q15276 862 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TSHZ3Q63HK5 1081 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 CWC27Q6UX04 472 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 SPATC1Q76KD6 591 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 JAMLQ86YT9 394 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TMEM102Q8N9M5 508 aaPredicted RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 SPATA5Q8NB90 893 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TBC1D22AQ8WUA7 517 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 ZNF622Q969S3 477 aaKnown RBP eCLIP6.02□□□□□ -1.452e-23■□□□□ 9.7
LDLR-209ENST00000558528 CHMP4CQ96CF2 233 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 IPO9Q96P70 1041 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 APBA2Q99767 749 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 SPATA9Q9BWV2 254 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 USP26Q9BXU7 913 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 EMILIN2Q9BXX0 1053 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 ZC3H12CQ9C0D7 883 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 TNKS2Q9H2K2 1166 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 ZNF576Q9H609 170 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 BRMS1Q9HCU9 246 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 TLR7Q9NYK1 1049 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 HMG20BQ9P0W2 317 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 NSFL1CQ9UNZ2 370 aaKnown RBP6.02□□□□□ -1.45
LDLR-209ENST00000558528 C4AP0C0L4 1744 aa6.02□□□□□ -1.45
LDLR-209ENST00000558528 UNC80Q8N2C7 3258 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 A0A096LPE4 126 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 A0A1W2PPZ6 126 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 MEIS3P2A8K0S8 358 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 MMP20O60882 483 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 LDHCP07864 332 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 RARAP10276 462 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 TIMP2P16035 220 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 GNAT2P19087 354 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 NME2P22392 152 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 GUCY2CP25092 1073 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 PSMA5P28066 241 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 GRIA4P48058 902 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 NT5C2P49902 561 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 GSTO1P78417 241 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 RPL6Q02878 288 aaKnown RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 PLAURQ03405 335 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 LBRQ14739 615 aaKnown RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 C4orf46Q504U0 113 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 FNDC3BQ53EP0 1204 aaKnown RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 C6orf15Q6UXA7 325 aaPredicted RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 DPP8Q6V1X1 898 aaPredicted RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 LDHDQ86WU2 507 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 DDX42Q86XP3 938 aaKnown RBP eCLIP6.01□□□□□ -1.45
LDLR-209ENST00000558528 WDR75Q8IWA0 830 aaKnown RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 RTKN2Q8IZC4 609 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 SAMD3Q8N6K7 520 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 TTLL6Q8N841 843 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 FBXO27Q8NI29 283 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 FAM84BQ96KN1 310 aaPredicted RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 KIF2CQ99661 725 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 DSCC1Q9BVC3 393 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 RUSC1Q9BVN2 902 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 COA1Q9GZY4 146 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 ZFAND3Q9H8U3 227 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 TIMMDC1Q9NPL8 285 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 BCCIPQ9P287 314 aaKnown RBP eCLIP6.01□□□□□ -1.45
LDLR-209ENST00000558528 LRP2BPQ9P2M1 347 aa6.01□□□□□ -1.45
LDLR-209ENST00000558528 RANBP2P49792 3224 aaKnown RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 RPAP1Q9BWH6 1393 aaPredicted RBP6.01□□□□□ -1.45
LDLR-209ENST00000558528 A0A1W2PQH9 124 aa6□□□□□ -1.45
LDLR-209ENST00000558528 E2F8A0AVK6 867 aa6□□□□□ -1.45
LDLR-209ENST00000558528 AGRPO00253 132 aa6□□□□□ -1.45
LDLR-209ENST00000558528 SASH3O75995 380 aa6□□□□□ -1.45
LDLR-209ENST00000558528 UFL1O94874 794 aa6□□□□□ -1.45
LDLR-209ENST00000558528 RASGRP1O95267 797 aa6□□□□□ -1.45
LDLR-209ENST00000558528 MAP3K6O95382 1288 aa6□□□□□ -1.45
LDLR-209ENST00000558528 ADORA1P30542 326 aa6□□□□□ -1.45
LDLR-209ENST00000558528 MCAMP43121 646 aa6□□□□□ -1.45
LDLR-209ENST00000558528 PHKA1P46020 1223 aa6□□□□□ -1.45
LDLR-209ENST00000558528 MMP14P50281 582 aa6□□□□□ -1.45
LDLR-209ENST00000558528 CLCQ05315 142 aa6□□□□□ -1.45
LDLR-209ENST00000558528 ZMYM1Q5SVZ6 1142 aa6□□□□□ -1.45
LDLR-209ENST00000558528 SLC9C2Q5TAH2 1124 aa6□□□□□ -1.45
LDLR-209ENST00000558528 FIGNL1Q6PIW4 674 aa6□□□□□ -1.45
LDLR-209ENST00000558528 LIAT1Q6ZQX7 453 aa6□□□□□ -1.45
LDLR-209ENST00000558528 LYSMD3Q7Z3D4 306 aa6□□□□□ -1.45
LDLR-209ENST00000558528 PODNQ7Z5L7 613 aa6□□□□□ -1.45
LDLR-209ENST00000558528 NECAB2Q7Z6G3 386 aa6□□□□□ -1.45
LDLR-209ENST00000558528 HSCBQ8IWL3 235 aa6□□□□□ -1.45
LDLR-209ENST00000558528 SNIP1Q8TAD8 396 aaKnown RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms