RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PCNX4Q63HM2 1172 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 NEK8Q86SG6 692 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 IL31RAQ8NI17 732 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 NPLOC4Q8TAT6 608 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 SOCS4Q8WXH5 440 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 USP6NLQ92738 828 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 ZFP91Q96JP5 570 aaPredicted RBP10.94□□□□□ -0.66
CUX1-216ENST00000558469 FGD4Q96M96 766 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 IWS1Q96ST2 819 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 MPHOSPH6Q99547 160 aaKnown RBP10.94□□□□□ -0.66
CUX1-216ENST00000558469 PDCD2LQ9BRP1 358 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 GABRQQ9UN88 632 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 ATP6V1DQ9Y5K8 247 aa10.94□□□□□ -0.66
CUX1-216ENST00000558469 B4DLN1 442 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 WNT7AO00755 349 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 EDIL3O43854 480 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 CYP3A4P08684 503 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 CYP2B6P20813 491 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 HOXD10P28358 340 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 TRAPPC10P48553 1259 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 CEBPZQ03701 1054 aaKnown RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 DNM1Q05193 864 aaKnown RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 PDE4DQ08499 809 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 ARHGEF6Q15052 776 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 ZNF174Q15697 407 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 TTC38Q5R3I4 469 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 CRYGNQ8WXF5 182 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 TNPO1Q92973 898 aaKnown RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 MAML3Q96JK9 1138 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 CHAMP1Q96JM3 812 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 ZNF396Q96N95 335 aaPredicted RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 RTEL1Q9NZ71 1219 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 TFIP11Q9UBB9 837 aaKnown RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 DIS3Q9Y2L1 958 aaKnown RBP10.93□□□□□ -0.66
CUX1-216ENST00000558469 PCDHB6Q9Y5E3 794 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 WDR81Q562E7 1941 aa10.93□□□□□ -0.66
CUX1-216ENST00000558469 ASB14A6NK59 587 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 FOXN1O15353 648 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 TDP2O95551 362 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 GNRH1P01148 92 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 HOXC6P09630 235 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 NCLP19338 710 aaKnown RBP10.92□□□□□ -0.66
CUX1-216ENST00000558469 MCM7P33993 719 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 FLT3LGP49771 235 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 MRPS9P82933 396 aaKnown RBP10.92□□□□□ -0.66
CUX1-216ENST00000558469 PRKCZQ05513 592 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 STXBP2Q15833 593 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 CCL14Q16627 93 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 XRRA1Q6P2D8 792 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 ZNF467Q7Z7K2 595 aaPredicted RBP10.92□□□□□ -0.66
CUX1-216ENST00000558469 VSIG10LQ86VR7 867 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 DCBLD2Q96PD2 775 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 NAP1L4Q99733 375 aaKnown RBP10.92□□□□□ -0.66
CUX1-216ENST00000558469 APBA2Q99767 749 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 FTOQ9C0B1 505 aaKnown RBP eCLIP10.92□□□□□ -0.66
CUX1-216ENST00000558469 FLRT1Q9NZU1 646 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 SRRDQ9UH36 339 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 CLIC4Q9Y696 253 aa10.92□□□□□ -0.66
CUX1-216ENST00000558469 CYP3A7-CYP3A51PA0A087WV96 503 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 LOC102724159A0A0B4J2E5 919 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 FAM86B1E9PN63 330 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 EIF3JO75822 258 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 FAM86B2P0C5J1 330 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 HSPA1AP0DMV8 641 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 HSPA1BP0DMV9 641 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 GCFC2P16383 781 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 CYP3A7P24462 503 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 EDNRBP24530 442 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 CIITAP33076 1130 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 PWP2Q15269 919 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 SF3A1Q15459 793 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 CEP55Q53EZ4 464 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 PRR16Q569H4 304 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 PPP4R3AQ6IN85 833 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 MAMDC4Q6UXC1 1216 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 ARMCX2Q7L311 632 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 EEPD1Q7L9B9 569 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 CYP2W1Q8TAV3 490 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 USP28Q96RU2 1077 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 MXRA8Q9BRK3 442 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 TINF2Q9BSI4 451 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 WDR11Q9BZH6 1224 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 DDX25Q9UHL0 483 aaKnown RBP10.91□□□□□ -0.66
CUX1-216ENST00000558469 CFAP45Q9UL16 551 aa10.91□□□□□ -0.66
CUX1-216ENST00000558469 SYNGAP1Q96PV0 1343 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 IGLV3-22A0A075B6J6 115 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 SLC37A4O43826 429 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 NEMFO60524 1076 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 STAM2O75886 525 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 HSPA8P11142 646 aaKnown RBP10.9□□□□□ -0.66
CUX1-216ENST00000558469 XRCC5P13010 732 aaKnown RBP10.9□□□□□ -0.66
CUX1-216ENST00000558469 ITGB5P18084 799 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 KRT85P78386 507 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 PTGDRQ13258 359 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 Q4G0T1 1027 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 ANO1Q5XXA6 986 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 OLFML2BQ68BL8 750 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 ATL3Q6DD88 541 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms