RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 PLEKHA8P1O95397 391 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 NR3C2P08235 984 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 MYOGP15173 224 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 RABGGTBP53611 331 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 SP2Q02086 613 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 HIC1Q14526 733 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 TTLL4Q14679 1199 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 TMEM67Q5HYA8 995 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 ARHGEF16Q5VV41 709 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 PSRC1Q6PGN9 363 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 CMTR1Q8N1G2 835 aaKnown RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 NCOA7Q8NI08 942 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 NSUN6Q8TEA1 469 aaKnown RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 HERVK_113Q902F9 699 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 DHX38Q92620 1227 aaKnown RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 ESYT1Q9BSJ8 1104 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 LRRC2Q9BYS8 371 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 DDX41Q9UJV9 622 aaKnown RBP12.69□□□□□ -0.38
SYNE2-227ENST00000557307 PNMA2Q9UL42 364 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 PCDHA1Q9Y5I3 950 aa12.69□□□□□ -0.38
SYNE2-227ENST00000557307 XIRP2A4UGR9 3374 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 DLL1O00548 723 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 SLC27A2O14975 620 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 NKRFO15226 690 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNE2-227ENST00000557307 ARHGEF15O94989 841 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 ZNF286BP0CG31 522 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 MYCLP12524 364 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-227ENST00000557307 TRDNQ13061 729 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 PGM5Q15124 567 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 STXBP2Q15833 593 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 TCTN1Q2MV58 587 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 GDF6Q6KF10 455 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-227ENST00000557307 DEFB128Q7Z7B8 93 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 RALYLQ86SE5 291 aaKnown RBP12.68□□□□□ -0.38
SYNE2-227ENST00000557307 MCF2L2Q86YR7 1114 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 MAFAQ8NHW3 353 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-227ENST00000557307 WNT8BQ93098 351 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 TIFAQ96CG3 184 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 NKX2-4Q9H2Z4 354 aa12.68□□□□□ -0.38
SYNE2-227ENST00000557307 MICAL3Q7RTP6 2002 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 SH2B2O14492 632 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-227ENST00000557307 GH1P01241 217 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 FGBP02675 491 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 FOSL2P15408 326 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 SEMA3FQ13275 785 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 GPNMBQ14956 572 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 SPRED2Q7Z698 418 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 FCHSD1Q86WN1 690 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.67□□□□□ -0.38
SYNE2-227ENST00000557307 ZNF654Q8IZM8 581 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 IWS1Q96ST2 819 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 ZNF576Q9H609 170 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 PRDM6Q9NQX0 595 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 CUL9Q8IWT3 2517 aa12.67□□□□□ -0.38
SYNE2-227ENST00000557307 FRMPD4Q14CM0 1322 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 hCG_1642624A0A1W2PR95 340 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 PRC1O43663 620 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 UBA1P22314 1058 aaKnown RBP12.66□□□□□ -0.38
SYNE2-227ENST00000557307 MRPS9P82933 396 aaKnown RBP12.66□□□□□ -0.38
SYNE2-227ENST00000557307 ZNF200P98182 395 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-227ENST00000557307 ADGRE1Q14246 886 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 HSDL1Q3SXM5 330 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 CREB3L3Q68CJ9 461 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 NFRKBQ6P4R8 1299 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 SRBD1Q8N5C6 995 aaKnown RBP12.66□□□□□ -0.38
SYNE2-227ENST00000557307 MPHOSPH6Q99547 160 aaKnown RBP12.66□□□□□ -0.38
SYNE2-227ENST00000557307 PRDM12Q9H4Q4 367 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 MRVI1Q9Y6F6 885 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 ATG2AQ2TAZ0 1938 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 MYO9BQ13459 2157 aa12.66□□□□□ -0.38
SYNE2-227ENST00000557307 TMEM265A0A087WTH1 108 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 ERICH2A1L162 156 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 ZBBXA8MT70 800 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 EIF3JO75822 258 aaKnown RBP12.65□□□□□ -0.38
SYNE2-227ENST00000557307 GGPS1O95749 300 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 NECTIN1Q15223 517 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 TMCO2Q7Z6W1 182 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-227ENST00000557307 VSIG10LQ86VR7 867 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 TCEANC2Q96MN5 208 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 ALG1Q9BT22 464 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 COL25A1Q9BXS0 654 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-227ENST00000557307 HDAC6Q9UBN7 1215 aa12.65□□□□□ -0.38
SYNE2-227ENST00000557307 LOXHD1Q8IVV2 1947 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 PNMA6FA0A0J9YX94 578 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 GCOM1H8Y6P7 765 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-227ENST00000557307 HAS3O00219 553 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 F2P00734 622 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 IQCF3P0C7M6 154 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 POLR2MP0CAP2 368 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 PSEN2P49810 448 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 PTGISQ16647 500 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 MYSM1Q5VVJ2 828 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 TRAF7Q6Q0C0 670 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 USP17L6PQ6QN14 398 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 CATIPQ7Z7H3 387 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 EMID1Q96A84 441 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-227ENST00000557307 OSBPL7Q9BZF2 842 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 MAF1Q9H063 256 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms