RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZNF865P0CJ78 1059 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-227ENST00000557269 ITGB5P18084 799 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 CCND2P30279 289 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 DDIT3P35638 169 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 NONOQ15233 471 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHMT2-227ENST00000557269 STXBP2Q15833 593 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 PKN2Q16513 984 aaKnown RBP14.63□□□□□ -0.07
SHMT2-227ENST00000557269 MAP3K21Q5TCX8 1036 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 MFSD14CQ5VZR4 134 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 MCTP2Q6DN12 878 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 TAPT1Q6NXT6 567 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 FERMT3Q86UX7 667 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 NOSTRINQ8IVI9 506 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 TRMT44Q8IYL2 757 aaKnown RBP14.63□□□□□ -0.07
SHMT2-227ENST00000557269 MCOLN1Q9GZU1 580 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 HTTP42858 3142 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 LOC102724159A0A0B4J2E5 919 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 FAM86B1E9PN63 330 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 EIF3JO75822 258 aaKnown RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 CYP3A4P08684 503 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 FAM86B2P0C5J1 330 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 CYBAP13498 195 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 PRKAR2AP13861 404 aaKnown RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 PTGS1P23219 599 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 CCND3P30281 292 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 ACVR2BQ13705 512 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 PWP2Q15269 919 aaKnown RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 FOXD4L5Q5VV16 416 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 SEPT14Q6ZU15 432 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 FOXD4L4Q8WXT5 416 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-227ENST00000557269 ZDHHC9Q9Y397 364 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 UBIAD1Q9Y5Z9 338 aa14.62□□□□□ -0.07
SHMT2-227ENST00000557269 MYH7BA7E2Y1 1941 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-227ENST00000557269 ADCY6O43306 1168 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 TDP2O95551 362 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 MYCP01106 439 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-227ENST00000557269 TOB1P50616 345 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-227ENST00000557269 RESTQ13127 1097 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 SEMA3FQ13275 785 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 SLC9C1Q4G0N8 1177 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 COL13A1Q5TAT6 717 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-227ENST00000557269 WDR11Q9BZH6 1224 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 ABHD16BQ9H3Z7 469 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 EHMT1Q9H9B1 1298 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 ZHX1Q9UKY1 873 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-227ENST00000557269 CNPY2Q9Y2B0 182 aa14.61□□□□□ -0.07
SHMT2-227ENST00000557269 IGLV3-22A0A075B6J6 115 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 RBM47A0AV96 593 aaKnown RBP14.6□□□□□ -0.07
SHMT2-227ENST00000557269 B4DLN1 442 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 ARIH2O95376 493 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 ARP10275 920 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 ATP2B1P20020 1258 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 CIITAP33076 1130 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 ADCYAP1R1P41586 468 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 USP11P51784 963 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 GNL2Q13823 731 aaKnown RBP14.6□□□□□ -0.07
SHMT2-227ENST00000557269 NBR1Q14596 966 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 MTFR1Q15390 333 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 LETM2Q2VYF4 491 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 XRRA1Q6P2D8 792 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 FAM173BQ6P4H8 233 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 NEK8Q86SG6 692 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 LENG1Q96BZ8 264 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-227ENST00000557269 INPP4AQ96PE3 977 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-227ENST00000557269 UIMC1Q96RL1 719 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 MPHOSPH6Q99547 160 aaKnown RBP14.6□□□□□ -0.07
SHMT2-227ENST00000557269 MXRA8Q9BRK3 442 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 UNC93B1Q9H1C4 597 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 VTA1Q9NP79 307 aa14.6□□□□□ -0.07
SHMT2-227ENST00000557269 SPATA31C2B4DYI2 1134 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 MEIS1O00470 390 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 ZSCAN22P10073 491 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-227ENST00000557269 SMPD1P17405 629 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 ZNF76P36508 570 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 SP2Q02086 613 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 CCDC144BQ3MJ40 725 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 CEP55Q53EZ4 464 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 GJC2Q5T442 439 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-227ENST00000557269 ANO1Q5XXA6 986 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 LENG9Q96B70 501 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 ARMC5Q96C12 935 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 ZNF333Q96JL9 665 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 IPO9Q96P70 1041 aaKnown RBP14.59□□□□□ -0.07
SHMT2-227ENST00000557269 BCAS3Q9H6U6 928 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 JADE2Q9NQC1 790 aa14.59□□□□□ -0.07
SHMT2-227ENST00000557269 CYP3A7-CYP3A51PA0A087WV96 503 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 POTEFA5A3E0 1075 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 SLC37A4O43826 429 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 CCNT1O60563 726 aaKnown RBP14.58□□□□□ -0.08
SHMT2-227ENST00000557269 ATP9AO75110 1047 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 STAM2O75886 525 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 BRD1O95696 1058 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 CYP3A7P24462 503 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 CNGA1P29973 690 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 LY6KQ17RY6 165 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 PRR16Q569H4 304 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 CCDC62Q6P9F0 684 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 PLA2G4DQ86XP0 818 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 COPS5Q92905 334 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms