RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 ZNF579Q8NAF0 562 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PPFIBP2Q8ND30 876 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 STAG1Q8WVM7 1258 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 ATP6V1G3Q96LB4 118 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 SMC6Q96SB8 1091 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 ELAC2Q9BQ52 826 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PLVAPQ9BX97 442 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 RNF26Q9BY78 433 aaPredicted RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 DNAJC17Q9NVM6 304 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KLHL14Q9P2G3 628 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 TMEM131LA2VDJ0 1609 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 SEMA3EO15041 775 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 GYPCP04921 128 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 VPS41P49754 854 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 FXR1P51114 621 aaKnown RBP eCLIP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 SNAP25P60880 206 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 HERVK_113P62684 666 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 ZBED6P86452 979 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 AP1ARQ63HQ0 302 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KAZNQ674X7 775 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 SEPT14Q6ZU15 432 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 RSRC2Q7L4I2 434 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 WHAMMQ8TF30 809 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KIFAP3Q92845 792 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 HPS3Q969F9 1004 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 RNPC3Q96LT9 517 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 FAM167BQ9BTA0 163 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 ZMYND12Q9H0C1 365 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 VCXQ9H320 206 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 DIP2BQ9P265 1576 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 USP17L3A6NCW0 530 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 USP17L4A6NCW7 530 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 CTNND1O60716 968 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KRT15P19012 456 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PPP2R5BQ15173 497 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 MAN2A1Q16706 1144 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 USP17L1Q7RTZ2 530 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 TPH2Q8IWU9 490 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 COG1Q8WTW3 980 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 LARP4BQ92615 738 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PIGSQ96S52 555 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 YIPF3Q9GZM5 350 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 MAP3K15Q6ZN16 1313 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KDM3AQ9Y4C1 1321 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PGRMC1O00264 195 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 BAG2O95816 211 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 AFPP02771 609 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PDHBP11177 359 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 XRCC5P13010 732 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 ATF2P15336 505 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 CCDC62Q6P9F0 684 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 REXO1Q8N1G1 1221 aaKnown RBP5.45□□□□□ -1.54
SYNE2-223ENST00000557005 WDR66Q8TBY9 1149 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KCNB2Q92953 911 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PBKQ96KB5 322 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 EYA3Q99504 573 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 CXorf56Q9H5V9 222 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 TMEM260Q9NX78 707 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 KIAA1024Q9UPX6 916 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 DNM3Q9UQ16 869 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 DLG5Q8TDM6 1919 aa5.45□□□□□ -1.54
SYNE2-223ENST00000557005 PPP1R3GB7ZBB8 358 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TXNDC9O14530 226 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 STAMBPO95630 424 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PDHA1P08559 390 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 DESP17661 470 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 ALDH3A1P30838 453 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 RFC4P35249 363 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PPP2R2AP63151 447 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 LLGL1Q15334 1064 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TBC1D10BQ4KMP7 808 aaPredicted RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PRR16Q569H4 304 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 USPL1Q5W0Q7 1092 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 HAUS3Q68CZ6 603 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PPP1R21Q6ZMI0 780 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 CCDC84Q86UT8 332 aaPredicted RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PNMA1Q8ND90 353 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 NAP1L4Q99733 375 aaKnown RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 NDST4Q9H3R1 872 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 MLXIPLQ9NP71 852 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 LIMA1Q9UHB6 759 aaKnown RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 COL4A3BPQ9Y5P4 624 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 USP31Q70CQ4 1352 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 FAM208AQ9UK61 1670 aaKnown RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 H7C1W4 665 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 OPHN1O60890 802 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TFRCP02786 760 aaKnown RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 KCNJ6P48051 423 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 RASSF2P50749 326 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 RASGRF1Q13972 1273 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TRIM65Q6PJ69 517 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TBCKQ8TEA7 893 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 MAK16Q9BXY0 300 aaKnown RBP5.44□□□□□ -1.54
SYNE2-223ENST00000557005 SLC40A1Q9NP59 571 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 TUBE1Q9UJT0 475 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 CAPN11Q9UMQ6 739 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PCDHA6Q9UN73 950 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 PCDHA8Q9Y5H6 950 aa5.44□□□□□ -1.54
SYNE2-223ENST00000557005 FMN2Q9NZ56 1722 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms