RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 CCDC69A6NI79 296 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 ARVCFO00192 962 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 ZBTB5O15062 677 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 KPNA6O60684 536 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 CFBP00751 764 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SMPD1P17405 629 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 GNAQP50148 359 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 TTLL4Q14679 1199 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SEC23AQ15436 765 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 STXBP2Q15833 593 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 QRICH1Q2TAL8 776 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 ARHGEF16Q5VV41 709 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 CCSAPQ6IQ19 270 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-222ENST00000556768 TAPT1Q6NXT6 567 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SLC30A10Q6XR72 485 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SYNE3Q6ZMZ3 975 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 CYB5R4Q7L1T6 521 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 HOMER1Q86YM7 354 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SAMD3Q8N6K7 520 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 SPIRE2Q8WWL2 714 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 BADQ92934 168 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 PURBQ96QR8 312 aaKnown RBP8.5□□□□□ -1.05
SCFD1-222ENST00000556768 ESYT1Q9BSJ8 1104 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 PDLIM7Q9NR12 457 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 PDGFCQ9NRA1 345 aa8.5□□□□□ -1.05
SCFD1-222ENST00000556768 GNEQ9Y223 722 aaKnown RBP8.5□□□□□ -1.05
SCFD1-222ENST00000556768 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.49□□□□□ -1.05
SCFD1-222ENST00000556768 PALM3A6NDB9 673 aaPredicted RBP8.49□□□□□ -1.05
SCFD1-222ENST00000556768 TXNP10599 105 aaKnown RBP8.49□□□□□ -1.05
SCFD1-222ENST00000556768 NKX3-2P78367 333 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 BEX3Q00994 111 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 CXCL17Q6UXB2 119 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 CHST3Q7LGC8 479 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 STAG2Q8N3U4 1231 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 OR6J1Q8NGC5 347 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 TMEM87BQ96K49 555 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 LZTS2Q9BRK4 669 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 SEC63Q9UGP8 760 aaKnown RBP8.49□□□□□ -1.05
SCFD1-222ENST00000556768 MAD2L2Q9UI95 211 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 COL6A3P12111 3177 aa8.49□□□□□ -1.05
SCFD1-222ENST00000556768 PNMA6FA0A0J9YX94 578 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 TRIM43BA6NCK2 446 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 MYADML2A6NDP7 307 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 POM121CA8CG34 1229 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 KIAA0355O15063 1070 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 ADCY6O43306 1168 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 EIF3JO75822 258 aaKnown RBP8.48□□□□□ -1.05
SCFD1-222ENST00000556768 SUPT20HL2P0C7V6 817 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 CALM1P0DP23 149 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 CALM2P0DP24 149 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 CALM3P0DP25 149 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 FPGSQ05932 587 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 PDE4CQ08493 712 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 FAAP100Q0VG06 881 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 ITGA7Q13683 1181 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 TMEM199Q8N511 208 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 SYTL5Q8TDW5 730 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-222ENST00000556768 GLMNQ92990 594 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 TRIM43Q96BQ3 446 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-222ENST00000556768 MAP3K14Q99558 947 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 ASTN1O14525 1302 aa8.48□□□□□ -1.05
SCFD1-222ENST00000556768 GCOM1H8Y6P7 765 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SPTLC1O15269 473 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 PRC1O43663 620 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 DDAH1O94760 285 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 TIMP1P01033 207 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 POLR2MP0CAP2 368 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 EDNRBP24530 442 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 CDK7P50613 346 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 FGD1P98174 961 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 TROAPQ12815 778 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 GRM4Q14833 912 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 C6orf132Q5T0Z8 1188 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 CREB3L3Q68CJ9 461 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SEPT14Q6ZU15 432 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SH3RF1Q7Z6J0 888 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 DEFB123Q8N688 67 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 IGDCC4Q8TDY8 1250 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 RRP36Q96EU6 259 aaKnown RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 LRCH3Q96II8 777 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 RIOX1Q9H6W3 641 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SLC12A7Q9Y666 1083 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 DDX49Q9Y6V7 483 aaKnown RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 RBM47A0AV96 593 aaKnown RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SLC27A2O14975 620 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 CDC45O75419 566 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 NR3C2P08235 984 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 MYL3P08590 195 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 HMGB1P09429 215 aaKnown RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 SMARCA1P28370 1054 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 ABL2P42684 1182 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 LIFRP42702 1097 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 KRT32Q14532 448 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 MFSD5Q6N075 450 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 KCNV1Q6PIU1 500 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 CUL5Q93034 780 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 TAAR1Q96RJ0 339 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 PIGSQ96S52 555 aa8.47□□□□□ -1.05
SCFD1-222ENST00000556768 MTG1Q9BT17 334 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-222ENST00000556768 LSG1Q9H089 658 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms