RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CHD2O14647 1828 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 MRC1P22897 1456 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 SORBS3O60504 671 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 MCM3P25205 808 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 VAV2P52735 878 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 NUDT12Q9BQG2 462 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 SHTN1A0MZ66 631 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEFA5A3E0 1075 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 PRPF6O94906 941 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEIP0CG38 1075 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 CYP2J2P51589 502 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 IFFO1Q0D2I5 559 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEGQ6S5H5 508 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEEQ6S8J3 1075 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 CCDC84Q86UT8 332 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 UHMK1Q8TAS1 419 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 KRT12Q99456 494 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 SH2D3AQ9BRG2 576 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 LEMD3Q9Y2U8 911 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 TRIM66O15016 1216 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 CFAP58Q5T655 872 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 CPXCR1Q8N123 301 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 PLCD3Q8N3E9 789 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 PIGOQ8TEQ8 1089 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 THAP9Q9H5L6 903 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 FAM13AO94988 1023 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 NR2F2P24468 414 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 ASIC2Q16515 512 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 VWA3BQ502W6 1294 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 NT5DC1Q5TFE4 455 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 KSR1Q8IVT5 923 aa13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 THRAP3Q9Y2W1 955 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-211ENST00000556726 CLRN2A0PK11 232 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 KIAA0754O94854 1291 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 RCAN1P53805 252 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 MYCT1Q8N699 235 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 TRIM58Q8NG06 486 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 LZTS2Q9BRK4 669 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 ANKZF1Q9H8Y5 726 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 FLT1P17948 1338 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 FAM237AA0A1B0GTK4 181 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 E2F4Q16254 413 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 SLFN13Q68D06 897 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 VPS36Q86VN1 386 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 COG1Q8WTW3 980 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 PPP1R12BO60237 982 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 KRT13P13646 458 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 GGCXP38435 758 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 ADGRF4Q8IZF3 695 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 MTA3Q9BTC8 594 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 EPB41L5Q9HCM4 733 aa13.41□□□□□ -0.26
CCDC88C-211ENST00000556726 ACTN1P12814 892 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 MAN2A1Q16706 1144 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 NAALADL2Q58DX5 795 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 ERMNQ8TAM6 284 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 U2AF1L4Q8WU68 220 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 UBLCP1Q8WVY7 318 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 LRRC1Q9BTT6 524 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 DNM3Q9UQ16 869 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 CAPN6Q9Y6Q1 641 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 RCCD1A6NED2 376 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 TCP10L2B9ZVM9 353 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 HGSO14964 777 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 CCT5P48643 541 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 TMED8Q6PL24 325 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 AP1M1Q9BXS5 423 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 DPH5Q9H2P9 285 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 TMOD2Q9NZR1 351 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 CAPN11Q9UMQ6 739 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 LRRIQ3A6PVS8 624 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 NKRFO15226 690 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 TTLL1O95922 423 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 ATP2B4P23634 1241 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 CYP2C19P33261 490 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 HERVK_113P62684 666 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 NPY5RQ15761 445 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 CERKLQ49MI3 558 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 SH3RF1Q7Z6J0 888 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 GIMAP8Q8ND71 665 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 TEKT1Q969V4 418 aa13.4□□□□□ -0.26
CCDC88C-211ENST00000556726 PLA2G4BP0C869 781 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 GJC1P36383 396 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 PRR5LQ6MZQ0 368 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 SELENOOQ9BVL4 669 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 LRRC27Q9C0I9 530 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 NFU1Q9UMS0 254 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 EPHB6O15197 1021 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 LRRN2O75325 713 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 GNGT1P63211 74 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 FKBP3Q00688 224 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 MKRN4PQ13434 485 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 TTI2Q6NXR4 508 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 RSRC2Q7L4I2 434 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 AMIGO3Q86WK7 504 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 AK8Q96MA6 479 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 TSGA10Q9BZW7 698 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 BHMT2Q9H2M3 363 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 ARMCX3Q9UH62 379 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms