RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ATP2A1O14983 1001 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 ZFYP08048 801 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-220ENST00000556486 CYP2C9P11712 490 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 RASA1P20936 1047 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 TNFAIP2Q03169 654 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 EEPD1Q7L9B9 569 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 APPBP2Q92624 585 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 UCN2Q96RP3 112 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 ABHD16BQ9H3Z7 469 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 DCTPP1Q9H773 170 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 CTDP1Q9Y5B0 961 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-220ENST00000556486 PTPRSQ13332 1948 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 IGKV6D-41A0A0C4DH26 115 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 CFAP99D6REC4 459 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 DYNC1LI2O43237 492 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-220ENST00000556486 GNAT2P19087 354 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 FSCN1Q16658 493 aaKnown RBP11.91□□□□□ -0.5
SCFD1-220ENST00000556486 PROX2Q3B8N5 592 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 TMEM67Q5HYA8 995 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 C20orf194Q5TEA3 1177 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 TMCO2Q7Z6W1 182 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-220ENST00000556486 TLK2Q86UE8 772 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 PRR7Q8TB68 274 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 EPS8L1Q8TE68 723 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 OSBP2Q969R2 916 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 MKL1Q969V6 931 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 KATNBL1Q9H079 304 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 VRTNQ9H8Y1 702 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 PDGFCQ9NRA1 345 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 TRMT13Q9NUP7 481 aaKnown RBP11.91□□□□□ -0.5
SCFD1-220ENST00000556486 ISY1Q9ULR0 285 aaKnown RBP11.91□□□□□ -0.5
SCFD1-220ENST00000556486 MUC6Q6W4X9 2439 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 PLIN4Q96Q06 1357 aa11.91□□□□□ -0.5
SCFD1-220ENST00000556486 ZBED4O75132 1171 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 ATG7O95352 703 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 NDUFB10O96000 172 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 SMPD1P17405 629 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 FBXO16Q8IX29 292 aaPredicted RBP11.9□□□□□ -0.5
SCFD1-220ENST00000556486 PRPF38AQ8NAV1 312 aaKnown RBP11.9□□□□□ -0.5
SCFD1-220ENST00000556486 SLC43A3Q8NBI5 491 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 GPATCH3Q96I76 525 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 AGBL1Q96MI9 1066 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 UIMC1Q96RL1 719 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 ZNF287Q9HBT7 754 aa11.9□□□□□ -0.5
SCFD1-220ENST00000556486 F5H6K3 240 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 RNF113AO15541 343 aaKnown RBP11.89□□□□□ -0.51
SCFD1-220ENST00000556486 GPAA1O43292 621 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 SMARCA5O60264 1052 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-220ENST00000556486 OAZ1P54368 228 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 SNAP25P60880 206 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 TAP1Q03518 808 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 KLRC3Q07444 240 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 GRB10Q13322 594 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 RPUSD2Q8IZ73 545 aaKnown RBP11.89□□□□□ -0.51
SCFD1-220ENST00000556486 GDPD5Q8WTR4 605 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 PURBQ96QR8 312 aaKnown RBP11.89□□□□□ -0.51
SCFD1-220ENST00000556486 AP5M1Q9H0R1 490 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 EPB41L4AQ9HCS5 686 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-220ENST00000556486 MTUS1Q9ULD2 1270 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 LCTP09848 1927 aa11.89□□□□□ -0.51
SCFD1-220ENST00000556486 TTC41PQ6P2S7 1318 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 PRDM1O75626 825 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 LRRFIP1Q32MZ4 808 aaKnown RBP11.88□□□□□ -0.51
SCFD1-220ENST00000556486 LRRC47Q8N1G4 583 aaKnown RBP11.88□□□□□ -0.51
SCFD1-220ENST00000556486 GMCL1P1Q8NEA9 526 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 ALDH8A1Q9H2A2 487 aaPredicted RBP11.88□□□□□ -0.51
SCFD1-220ENST00000556486 MKNK2Q9HBH9 465 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 SLC38A10Q9HBR0 1119 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 MTMR4Q9NYA4 1195 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 CLIP2Q9UDT6 1046 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 COG5Q9UP83 839 aa11.88□□□□□ -0.51
SCFD1-220ENST00000556486 GNEQ9Y223 722 aaKnown RBP11.88□□□□□ -0.51
SCFD1-220ENST00000556486 TANC1Q9C0D5 1861 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 LCHNA4D1U4 455 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 CHMP4BP1P59074 171 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 SEMA3FQ13275 785 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 FAM47CQ5HY64 1035 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 SWT1Q5T5J6 900 aaKnown RBP11.87□□□□□ -0.51
SCFD1-220ENST00000556486 FTOQ9C0B1 505 aaKnown RBP eCLIP11.87□□□□□ -0.51
SCFD1-220ENST00000556486 RABGEF1Q9UJ41 708 aa11.87□□□□□ -0.51
SCFD1-220ENST00000556486 MAFBQ9Y5Q3 323 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-220ENST00000556486 TET1Q8NFU7 2136 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 MINDY4BA8MYZ0 360 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 LPXNO60711 386 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 CABYRO75952 493 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 TTLL1O95922 423 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 MYL3P08590 195 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 MRE11P49959 708 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 NKX3-2P78367 333 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 RASGRP2Q7LDG7 609 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 IFNL3Q8IZI9 196 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 FAM133AQ8N9E0 248 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 NEDD1Q8NHV4 660 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 PI4K2BQ8TCG2 481 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 ANKS1AQ92625 1134 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 CEP95Q96GE4 821 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 ACAD9Q9H845 621 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 A1CFQ9NQ94 594 aaKnown RBP11.86□□□□□ -0.51
SCFD1-220ENST00000556486 RNF146Q9NTX7 359 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms