RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SLC6A11P48066 632 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 KCNC1P48547 511 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 TESK1Q15569 626 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 DDR2Q16832 855 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 RIOX2Q8IUF8 465 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 CELF2-AS1Q8N7Q2 184 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 TMEM145Q8NBT3 493 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 TMEM169Q96HH4 297 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 IGSF5Q9NSI5 407 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 PRRG2O14669 202 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 SLURP1P55000 103 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 LIPIQ6XZB0 460 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 ETV3LQ6ZN32 361 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 NLRP10Q86W26 655 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 ADGRG2Q8IZP9 1017 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 Q8N1Y9 231 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 RCBTB1Q8NDN9 531 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 ZNF526Q8TF50 670 aaPredicted RBP8.08□□□□□ -1.12
PRPF39-209ENST00000556353 COA3Q9Y2R0 106 aaPredicted RBP8.08□□□□□ -1.12
PRPF39-209ENST00000556353 X6R8D5 127 aa8.08□□□□□ -1.12
PRPF39-209ENST00000556353 NCANO14594 1321 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 A0A1B0GTL3 188 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 SH3D21A4FU49 640 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 CYP2C8P10632 490 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 PPP2R2AP63151 447 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 KCTD13Q8WZ19 329 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 DDX11Q96FC9 970 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 C1orf159Q96HA4 380 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 CHAMP1Q96JM3 812 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 NOX5Q96PH1 765 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 PALD1Q9ULE6 856 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 PCDHA2Q9Y5H9 948 aa8.07□□□□□ -1.12
PRPF39-209ENST00000556353 A0A1W2PQU0 124 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 KLF4O43474 513 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 CAPNS1P04632 268 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 GRIA2P42262 883 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 LSAMPQ13449 338 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 SLC35F1Q5T1Q4 408 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 DENND5AQ6IQ26 1287 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 MILR1Q7Z6M3 343 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 MIB1Q86YT6 1006 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 ZBTB8AQ96BR9 441 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 PCDH18Q9HCL0 1135 aa8.06□□□□□ -1.12
PRPF39-209ENST00000556353 H7BY64 318 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 FOXD2O60548 495 aaPredicted RBP8.05□□□□□ -1.12
PRPF39-209ENST00000556353 C8BP07358 591 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 LCP1P13796 627 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 DLX2Q07687 328 aaPredicted RBP8.05□□□□□ -1.12
PRPF39-209ENST00000556353 MAP4K2Q12851 820 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 ZC3H18Q86VM9 953 aaKnown RBP8.05□□□□□ -1.12
PRPF39-209ENST00000556353 SPATA25Q9BR10 227 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 FBXL7Q9UJT9 491 aa8.05□□□□□ -1.12
PRPF39-209ENST00000556353 IQCA1LA6NCM1 817 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 SYN1P17600 705 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 HSP90AA2PQ14568 343 aaPredicted RBP8.04□□□□□ -1.12
PRPF39-209ENST00000556353 CHRNA2Q15822 529 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 ERICH6BQ5W0A0 696 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 CD300LDQ6UXZ3 194 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 TTLL7Q6ZT98 887 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 FRMD5Q7Z6J6 570 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 CARFQ8N187 725 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 CXorf38Q8TB03 319 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 SGSM3Q96HU1 749 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 TEPSINQ96N21 525 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 IER2Q9BTL4 223 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 ADAM7Q9H2U9 754 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 CLDND1Q9NY35 253 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 NTMQ9P121 344 aa8.04□□□□□ -1.12
PRPF39-209ENST00000556353 SMARCA5O60264 1052 aaPredicted RBP8.03□□□□□ -1.12
PRPF39-209ENST00000556353 ZC3H6P61129 1189 aaKnown RBP8.03□□□□□ -1.12
PRPF39-209ENST00000556353 SMAD4Q13485 552 aaKnown RBP8.03□□□□□ -1.12
PRPF39-209ENST00000556353 FAM126BQ8IXS8 530 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 GORASP1Q9BQQ3 440 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 YIPF4Q9BSR8 244 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 KRTAP4-9Q9BYQ8 210 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 TRIM55Q9BYV6 548 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 USP40Q9NVE5 1235 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 PODXL2Q9NZ53 605 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 NPFFR2Q9Y5X5 522 aa8.03□□□□□ -1.12
PRPF39-209ENST00000556353 HGSO14964 777 aaPredicted RBP8.02□□□□□ -1.13
PRPF39-209ENST00000556353 RAB33AQ14088 237 aa8.02□□□□□ -1.13
PRPF39-209ENST00000556353 NT5DC1Q5TFE4 455 aa8.02□□□□□ -1.13
PRPF39-209ENST00000556353 FAM26EQ8N5C1 309 aa8.02□□□□□ -1.13
PRPF39-209ENST00000556353 LINC00482Q8N8I6 264 aa8.02□□□□□ -1.13
PRPF39-209ENST00000556353 AARSD1Q9BTE6 412 aaKnown RBP8.02□□□□□ -1.13
PRPF39-209ENST00000556353 C11orf84Q9BUA3 381 aaPredicted RBP8.02□□□□□ -1.13
PRPF39-209ENST00000556353 NGRNQ9NPE2 291 aaKnown RBP8.02□□□□□ -1.13
PRPF39-209ENST00000556353 SPATA6Q9NWH7 488 aaPredicted RBP8.02□□□□□ -1.13
PRPF39-209ENST00000556353 ZNF652Q9Y2D9 606 aa8.02□□□□□ -1.13
PRPF39-209ENST00000556353 DLX3O60479 287 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 DGKIO75912 1065 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 STK10O94804 968 aaKnown RBP8.01□□□□□ -1.13
PRPF39-209ENST00000556353 SARSP49591 514 aaKnown RBP8.01□□□□□ -1.13
PRPF39-209ENST00000556353 USP53Q70EK8 1073 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 CKAP2LQ8IYA6 745 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 ST13P5Q8NFI4 369 aaPredicted RBP8.01□□□□□ -1.13
PRPF39-209ENST00000556353 EPB41L1Q9H4G0 881 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 GPR27Q9NS67 375 aa8.01□□□□□ -1.13
PRPF39-209ENST00000556353 BUD31P41223 144 aaPredicted RBP8□□□□□ -1.13
PRPF39-209ENST00000556353 STAT5AP42229 794 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms