RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 CIR1Q86X95 450 aaPredicted RBP6.16□□□□□ -1.42
SCFD1-218ENST00000556256 RCC1LQ96I51 464 aaKnown RBP6.16□□□□□ -1.42
SCFD1-218ENST00000556256 WWC2-AS2Q96NR7 200 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 CLEC1BQ9P126 229 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 CYP1A1P04798 512 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-218ENST00000556256 PLS3P13797 630 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 IL13P35225 146 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 PPP2CBP62714 309 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 PPP2CAP67775 309 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 KLF10Q13118 480 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 R3HDM1Q15032 1099 aaKnown RBP6.15□□□□□ -1.42
SCFD1-218ENST00000556256 CR1LQ2VPA4 569 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 MILR1Q7Z6M3 343 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 TEX2Q8IWB9 1127 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 FAM126BQ8IXS8 530 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 IGDCC4Q8TDY8 1250 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 SEC14L1Q92503 715 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 GPRC5CQ9NQ84 441 aa6.15□□□□□ -1.42
SCFD1-218ENST00000556256 C22orf46C9J442 243 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 THBDP07204 575 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 EPHB4P54760 987 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 RBM10P98175 930 aaKnown RBP6.14□□□□□ -1.43
SCFD1-218ENST00000556256 SLC7A5Q01650 507 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 LDLRAD1Q5T700 205 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 YTHDC1Q96MU7 727 aaKnown RBP6.14□□□□□ -1.43
SCFD1-218ENST00000556256 MMP19Q99542 508 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 PTPN18Q99952 460 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 TMEM168Q9H0V1 697 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 BTG4Q9NY30 223 aa6.14□□□□□ -1.43
SCFD1-218ENST00000556256 ING1Q9UK53 422 aaPredicted RBP6.14□□□□□ -1.43
SCFD1-218ENST00000556256 PATE3B3GLJ2 98 aa6.13□□□□□ -1.43
SCFD1-218ENST00000556256 PKN3Q6P5Z2 889 aa6.13□□□□□ -1.43
SCFD1-218ENST00000556256 COPS5Q92905 334 aa6.13□□□□□ -1.43
SCFD1-218ENST00000556256 PHAXQ9H814 394 aaKnown RBP6.13□□□□□ -1.43
SCFD1-218ENST00000556256 L2HGDHQ9H9P8 463 aa6.13□□□□□ -1.43
SCFD1-218ENST00000556256 NGRNQ9NPE2 291 aaKnown RBP6.13□□□□□ -1.43
SCFD1-218ENST00000556256 JADE2Q9NQC1 790 aa6.13□□□□□ -1.43
SCFD1-218ENST00000556256 SLC6A11P48066 632 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 MLLT6P55198 1093 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-218ENST00000556256 NKX3-2P78367 333 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 INF2Q27J81 1249 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 SPDYAQ5MJ70 313 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 CCDC81Q6ZN84 652 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 ARHGEF18Q6ZSZ5 1173 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 KBTBD2Q8IY47 623 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 TMEM87AQ8NBN3 555 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 SUGT1Q9Y2Z0 365 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 SLC12A7Q9Y666 1083 aa6.12□□□□□ -1.43
SCFD1-218ENST00000556256 B4GALT4O60513 344 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 ZNF623O75123 536 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 SELENOPP49908 381 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 ZNF326Q5BKZ1 582 aaKnown RBP6.11□□□□□ -1.43
SCFD1-218ENST00000556256 ZNF513Q8N8E2 541 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-218ENST00000556256 KLHL6Q8WZ60 621 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 CRBNQ96SW2 442 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 BCL2L13Q9BXK5 485 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 TCAF1Q9Y4C2 921 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 TESMINQ9Y4I5 508 aa6.11□□□□□ -1.43
SCFD1-218ENST00000556256 A0A1W2PQH9 124 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 MUSKO15146 869 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 SCRN1Q12765 414 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 ZNF394Q53GI3 561 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 SLFN13Q68D06 897 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 RIOX2Q8IUF8 465 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 GIPC2Q8TF65 315 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 ZSWIM3Q96MP5 696 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 AKT3Q9Y243 479 aa6.1□□□□□ -1.43
SCFD1-218ENST00000556256 KCNH1O95259 989 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 FPR2P25090 351 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 ZNF76P36508 570 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 MROH9Q5TGP6 573 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 Q8TCH9 128 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 CLIC6Q96NY7 704 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 YIPF4Q9BSR8 244 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 SEMA4AQ9H3S1 761 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 APEX2Q9UBZ4 518 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 PCDHGB7Q9Y5F8 929 aa6.09□□□□□ -1.43
SCFD1-218ENST00000556256 CCDC27Q2M243 656 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 CEP68Q76N32 757 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 C19orf47Q8N9M1 422 aaKnown RBP6.08□□□□□ -1.44
SCFD1-218ENST00000556256 ZCCHC14Q8WYQ9 949 aaKnown RBP6.08□□□□□ -1.44
SCFD1-218ENST00000556256 GINM1Q9NU53 330 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 CROTQ9UKG9 612 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 ZDHHC9Q9Y397 364 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 EMC9Q9Y3B6 208 aa6.08□□□□□ -1.44
SCFD1-218ENST00000556256 TIMM13Q9Y5L4 95 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-218ENST00000556256 KLHL36Q8N4N3 616 aa6.07□□□□□ -1.44
SCFD1-218ENST00000556256 FRS2Q8WU20 508 aa6.07□□□□□ -1.44
SCFD1-218ENST00000556256 TOE1Q96GM8 510 aaKnown RBP6.07□□□□□ -1.44
SCFD1-218ENST00000556256 ZNF341Q9BYN7 854 aa6.07□□□□□ -1.44
SCFD1-218ENST00000556256 MEGF9Q9H1U4 602 aa6.07□□□□□ -1.44
SCFD1-218ENST00000556256 X6R8D5 127 aa6.07□□□□□ -1.44
SCFD1-218ENST00000556256 ANKRD34BA5PLL1 514 aa6.06□□□□□ -1.44
SCFD1-218ENST00000556256 NPIPB8E9PQR5 432 aa6.06□□□□□ -1.44
SCFD1-218ENST00000556256 CYP7B1O75881 506 aa6.06□□□□□ -1.44
SCFD1-218ENST00000556256 GIPRP48546 466 aa6.06□□□□□ -1.44
SCFD1-218ENST00000556256 EIF6P56537 245 aaKnown RBP6.06□□□□□ -1.44
SCFD1-218ENST00000556256 TGFB2P61812 414 aa6.06□□□□□ -1.44
SCFD1-218ENST00000556256 RPL11P62913 178 aaKnown RBP6.06□□□□□ -1.44
SCFD1-218ENST00000556256 RACK1P63244 317 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms