RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ANAPC15P60006 121 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 TLE2Q04725 743 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 UBE2SQ16763 222 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 LY6KQ17RY6 165 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 PPP1R18Q6NYC8 613 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 VSIG10LQ86VR7 867 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 ZFP91Q96JP5 570 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-219ENST00000555563 LARP6Q9BRS8 491 aaKnown RBP15.79■□□□□ 0.12
SHMT2-219ENST00000555563 NCOA5Q9HCD5 579 aaKnown RBP15.79■□□□□ 0.12
SHMT2-219ENST00000555563 PDLIM7Q9NR12 457 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 PDRG1Q9NUG6 133 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 MRVI1Q9Y6F6 885 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 SZT2Q5T011 3432 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 A0A0U1RQG5 324 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-219ENST00000555563 EIF5BO60841 1220 aaKnown RBP15.78■□□□□ 0.12
SHMT2-219ENST00000555563 MAGEA10P43363 369 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-219ENST00000555563 CPT1AP50416 773 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 NAPAP54920 295 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 CCT2P78371 535 aaKnown RBP15.78■□□□□ 0.12
SHMT2-219ENST00000555563 ARHGAP1Q07960 439 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 VTI1AQ96AJ9 217 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 PRO3102Q9H379 93 aa15.78■□□□□ 0.12
SHMT2-219ENST00000555563 PRDM5Q9NQX1 630 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-219ENST00000555563 hCG_1984214I3L0E3 225 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 CABYRO75952 493 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 GH1P01241 217 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 MRPS9P82933 396 aaKnown RBP15.77■□□□□ 0.12
SHMT2-219ENST00000555563 PURAQ00577 322 aaKnown RBP15.77■□□□□ 0.12
SHMT2-219ENST00000555563 NTRK3Q16288 839 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 PFKFB3Q16875 520 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-219ENST00000555563 C8orf34Q49A92 452 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 ANKRD33Q7Z3H0 272 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 ZNF713Q8N859 430 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-219ENST00000555563 PHKBQ93100 1093 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 IL17RAQ96F46 866 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 GDF15Q99988 308 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 BARHL2Q9NY43 387 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 PRKAG2Q9UGJ0 569 aa15.77■□□□□ 0.12
SHMT2-219ENST00000555563 DDX41Q9UJV9 622 aaKnown RBP15.77■□□□□ 0.12
SHMT2-219ENST00000555563 CEP290O15078 2479 aa15.77■□□□□ 0.11
SHMT2-219ENST00000555563 MROH7Q68CQ1 1323 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 A6NJR5 290 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 ARVCFO00192 962 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 PPFIA3O75145 1194 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 MYL3P08590 195 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 CLTBP09497 229 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 SCG2P13521 617 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 UBA1P22314 1058 aaKnown RBP15.76■□□□□ 0.11
SHMT2-219ENST00000555563 CDK7P50613 346 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 ADCY7P51828 1080 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 PSMC6P62333 389 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 SH3RF1Q7Z6J0 888 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 AFG1LQ8WV93 481 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 INPP4AQ96PE3 977 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-219ENST00000555563 RIC8AQ9NPQ8 531 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 POLR3EQ9NVU0 708 aa15.76■□□□□ 0.11
SHMT2-219ENST00000555563 GRIN2DO15399 1336 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 TRIM43BA6NCK2 446 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 SPDYE3A6NKU9 549 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 DCDC2CA8MYV0 355 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 PRPF3O43395 683 aaKnown RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 STAM2O75886 525 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 MMP3P08254 477 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 IFNAR1P17181 557 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 MDM2Q00987 491 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 FAAP100Q0VG06 881 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 ITGA7Q13683 1181 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 PKN1Q16512 942 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 BRDTQ58F21 947 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 PCNX4Q63HM2 1172 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 FAM126BQ8IXS8 530 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 EMID1Q96A84 441 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 TRIM43Q96BQ3 446 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 ZNF274Q96GC6 653 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 TOX2Q96NM4 488 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 SLC26A6Q9BXS9 759 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 RNF26Q9BY78 433 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-219ENST00000555563 SCN10AQ9Y5Y9 1956 aa15.75■□□□□ 0.11
SHMT2-219ENST00000555563 SMCO2A6NFE2 343 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 SORBS3O60504 671 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 SP2Q02086 613 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 STK3Q13188 491 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 SEMA3FQ13275 785 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 GNPTABQ3T906 1256 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 XRRA1Q6P2D8 792 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 KCNV1Q6PIU1 500 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 SLC43A3Q8NBI5 491 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 PGBD1Q96JS3 809 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 MTG1Q9BT17 334 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-219ENST00000555563 RTEL1Q9NZ71 1219 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 PCDHA6Q9UN73 950 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 PCDHA8Q9Y5H6 950 aa15.74■□□□□ 0.11
SHMT2-219ENST00000555563 RANBP2P49792 3224 aaKnown RBP15.74■□□□□ 0.11
SHMT2-219ENST00000555563 A0A1W2PPC1 479 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 ESYT2A0FGR8 921 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 KIAA0355O15063 1070 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 KPNA6O60684 536 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 GGPS1O95749 300 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TGFB3P10600 412 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 ICAM3P32942 547 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms