RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PCDH18Q9HCL0 1135 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 TSC22D4Q9Y3Q8 395 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 TRBV23OR9-2A0A075B6M9 112 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 LAMTOR5O43504 91 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 CRIP3Q6Q6R5 217 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 MIB1Q86YT6 1006 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 RCC1LQ96I51 464 aaKnown RBP6.41□□□□□ -1.38
SCFD1-216ENST00000555550 KLC2Q9H0B6 622 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 AP5M1Q9H0R1 490 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 GINM1Q9NU53 330 aa6.41□□□□□ -1.38
SCFD1-216ENST00000555550 CCDC9Q9Y3X0 531 aaKnown RBP6.41□□□□□ -1.38
SCFD1-216ENST00000555550 A0A1W2PQH9 124 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 NPEPPSL1A6NEC2 478 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 C22orf46C9J442 243 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 KCNH1O95259 989 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 CYP1A1P04798 512 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-216ENST00000555550 THBDP07204 575 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 RACK1P63244 317 aaKnown RBP6.4□□□□□ -1.38
SCFD1-216ENST00000555550 GRB10Q13322 594 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 INF2Q27J81 1249 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 PRAMEF18Q5VWM3 479 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 ZNF585AQ6P3V2 769 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 ZC3H18Q86VM9 953 aaKnown RBP6.4□□□□□ -1.38
SCFD1-216ENST00000555550 PALM2Q8IXS6 379 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 ZNF654Q8IZM8 581 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 KLHL6Q8WZ60 621 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 ZNF747Q9BV97 191 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 PHAXQ9H814 394 aaKnown RBP6.4□□□□□ -1.38
SCFD1-216ENST00000555550 DDX41Q9UJV9 622 aaKnown RBP6.4□□□□□ -1.38
SCFD1-216ENST00000555550 AKT3Q9Y243 479 aa6.4□□□□□ -1.38
SCFD1-216ENST00000555550 GPR42O15529 346 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 IL13P35225 146 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 SCRN1Q12765 414 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 ADAM9Q13443 819 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 CR1LQ2VPA4 569 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 COPS5Q92905 334 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 MMP19Q99542 508 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 PTPN18Q99952 460 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 CD248Q9HCU0 757 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 APEX2Q9UBZ4 518 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 SLC12A7Q9Y666 1083 aa6.39□□□□□ -1.39
SCFD1-216ENST00000555550 CYR61O00622 381 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 FZD7O75084 574 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 FPR2P25090 351 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 PPP2R5EQ16537 467 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 ZNF513Q8N8E2 541 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-216ENST00000555550 SEC14L1Q92503 715 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 ZSWIM3Q96MP5 696 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 VPS11Q9H270 941 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 DEF6Q9H4E7 631 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 HS3ST3A1Q9Y663 406 aa6.38□□□□□ -1.39
SCFD1-216ENST00000555550 EIF6P56537 245 aaKnown RBP6.37□□□□□ -1.39
SCFD1-216ENST00000555550 PAK2Q13177 524 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 SURF1Q15526 300 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 KIAA1211LQ6NV74 962 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 NT5DC4Q86YG4 428 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 FAM126BQ8IXS8 530 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 JADE2Q9NQC1 790 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 EFR3BQ9Y2G0 817 aa6.37□□□□□ -1.39
SCFD1-216ENST00000555550 C9orf118A6NHY6 69 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 UNCXA6NJT0 531 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 ZNF28P17035 718 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 MLLT6P55198 1093 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 NKX3-2P78367 333 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 HDLBPQ00341 1268 aaKnown RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 CEP68Q76N32 757 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 METTL16Q86W50 562 aaKnown RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 CIR1Q86X95 450 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 IGDCC4Q8TDY8 1250 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 MBD6Q96DN6 1003 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 CDK5RAP1Q96SZ6 601 aaKnown RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 YIPF4Q9BSR8 244 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 LGR4Q9BXB1 951 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 L2HGDHQ9H9P8 463 aa6.36□□□□□ -1.39
SCFD1-216ENST00000555550 KIAA1522Q9P206 1035 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-216ENST00000555550 B4GALT4O60513 344 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 GIPRP48546 466 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 PPP2CBP62714 309 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 PPP2CAP67775 309 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 DNERQ8NFT8 737 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 GPRASP2Q96D09 838 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 SPATA32Q96LK8 384 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 WWC2-AS2Q96NR7 200 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 TMEM168Q9H0V1 697 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 SLITRK6Q9H5Y7 841 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 CROTQ9UKG9 612 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 EMC9Q9Y3B6 208 aa6.35□□□□□ -1.39
SCFD1-216ENST00000555550 COL9A2Q14055 689 aaPredicted RBP6.34□□□□□ -1.39
SCFD1-216ENST00000555550 CRB2Q5IJ48 1285 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 USP51Q70EK9 711 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 KBTBD2Q8IY47 623 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 FRS2Q8WU20 508 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 TRMT2BQ96GJ1 504 aaKnown RBP6.34□□□□□ -1.39
SCFD1-216ENST00000555550 YTHDC1Q96MU7 727 aaKnown RBP6.34□□□□□ -1.39
SCFD1-216ENST00000555550 PCED1AQ9H1Q7 454 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 ZDHHC9Q9Y397 364 aa6.34□□□□□ -1.39
SCFD1-216ENST00000555550 ANKRD34BA5PLL1 514 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 ARNTLO00327 626 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 BCL6P41182 706 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms