RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 MYO7AQ13402 2215 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 GPAA1O43292 621 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 RAB11FIP3O75154 756 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 APPP05067 770 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MMP3P08254 477 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 LTBRP36941 435 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 PDE4BQ07343 736 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MKRN4PQ13434 485 aaPredicted RBP11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MBTPS1Q14703 1052 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 SMAD2Q15796 467 aaKnown RBP11.41□□□□□ -0.58
SCFD1-215ENST00000555259 BMP8AQ7Z5Y6 402 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MYOCDQ8IZQ8 938 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 AFG1LQ8WV93 481 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 APPBP2Q92624 585 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 SAMD11Q96NU1 681 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MPHOSPH6Q99547 160 aaKnown RBP11.41□□□□□ -0.58
SCFD1-215ENST00000555259 POP1Q99575 1024 aaKnown RBP11.41□□□□□ -0.58
SCFD1-215ENST00000555259 GTF2IRD1Q9UHL9 959 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 SPTBN4Q9H254 2564 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 LGR5O75473 907 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 AMHP03971 560 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 GNAT2P19087 354 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 FOXK2Q01167 660 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 TCF15Q12870 199 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 GPM6BQ13491 265 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 PPP4R3BQ5MIZ7 849 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 ZNF618Q5T7W0 954 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 RNF207Q6ZRF8 634 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 RNF135Q8IUD6 432 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 IFNL3Q8IZI9 196 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 CLEC4DQ8WXI8 215 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 EDAQ92838 391 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 PRRX2Q99811 253 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 HDAC6Q9UBN7 1215 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MTMR7Q9Y216 660 aa11.41□□□□□ -0.58
SCFD1-215ENST00000555259 MICAL3Q7RTP6 2002 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 GFRA3O60609 400 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 HMMRO75330 724 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 SLC16A2P36021 539 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 RPS6P62753 249 aaKnown RBP11.4□□□□□ -0.58
SCFD1-215ENST00000555259 PTK7Q13308 1070 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 CTC1Q2NKJ3 1217 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 TRIM71Q2Q1W2 868 aaKnown RBP11.4□□□□□ -0.58
SCFD1-215ENST00000555259 TTBK2Q6IQ55 1244 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 CCDC62Q6P9F0 684 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 RPAINQ86UA6 219 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 FBXO11Q86XK2 927 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 SIRT2Q8IXJ6 389 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 C7orf31Q8N865 590 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 DNERQ8NFT8 737 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 WNT8BQ93098 351 aa11.4□□□□□ -0.58
SCFD1-215ENST00000555259 VPS13AQ96RL7 3174 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 PATL2C9JE40 543 aaKnown RBP11.39□□□□□ -0.59
SCFD1-215ENST00000555259 MBTPS2O43462 519 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 NCK2O43639 380 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 NMT2O60551 498 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 SLC3A2P08195 630 aaKnown RBP11.39□□□□□ -0.59
SCFD1-215ENST00000555259 CASTP20810 708 aaKnown RBP11.39□□□□□ -0.59
SCFD1-215ENST00000555259 DLX2Q07687 328 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-215ENST00000555259 ARHGAP1Q07960 439 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 CLUL1Q15846 466 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 PKN1Q16512 942 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 CCDC96Q2M329 555 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 SYDE2Q5VT97 1194 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 BTNL9Q6UXG8 535 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 TMEM192Q8IY95 271 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 KBTBD3Q8NAB2 608 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 DBF4BQ8NFT6 615 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 PANK1Q8TE04 598 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 PBXIP1Q96AQ6 731 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 YME1L1Q96TA2 773 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 IL17RBQ9NRM6 502 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 EMSYQ7Z589 1322 aa11.39□□□□□ -0.59
SCFD1-215ENST00000555259 PTPRZ1P23471 2315 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-215ENST00000555259 TMEM221A6NGB7 291 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 TSPY2A6NKD2 308 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 M0R296 226 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 M0R2C6 588 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 RNF113AO15541 343 aaKnown RBP11.38□□□□□ -0.59
SCFD1-215ENST00000555259 GH1P01241 217 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 PPARAQ07869 468 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 LY6KQ17RY6 165 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 TRIM67Q6ZTA4 783 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 CHST3Q7LGC8 479 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 DCAF4Q8WV16 495 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 NACAP1Q9BZK3 213 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 COL4A6Q14031 1691 aa11.38□□□□□ -0.59
SCFD1-215ENST00000555259 B4DLN1 442 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 STXBP3O00186 592 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 NOVP48745 357 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 PSEN2P49810 448 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 MRPL12P52815 198 aaKnown RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 SMAD4Q13485 552 aaKnown RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 DGKDQ16760 1214 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 SUGP1Q8IWZ8 645 aaKnown RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 TOP1MTQ969P6 601 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 ALG1Q9BT22 464 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 KATNAL1Q9BW62 490 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 ALG13Q9NP73 1137 aaKnown RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 FAM86C1Q9NVL1 165 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms