RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 FERMT3Q86UX7 667 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 FBXO16Q8IX29 292 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-218ENST00000555213 DAGLBQ8NCG7 672 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 C8orf76Q96K31 380 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 ANO3Q9BYT9 981 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 UNC93B1Q9H1C4 597 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 PCDHA6Q9UN73 950 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 PCDHA8Q9Y5H6 950 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 VPS37CA5D8V6 355 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-218ENST00000555213 KIF28PB7ZC32 967 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 ADAMTS3O15072 1205 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 SEPT4O43236 478 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 EIF3JO75822 258 aaKnown RBP12.44□□□□□ -0.42
SHMT2-218ENST00000555213 SNAI1O95863 264 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-218ENST00000555213 MYCLP12524 364 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-218ENST00000555213 KRT2P35908 639 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 FOSBP53539 338 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 PGM5Q15124 567 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 NPY5RQ15761 445 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 GNPTABQ3T906 1256 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 JAKMIP3Q5VZ66 844 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 PCNX4Q63HM2 1172 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 EEPD1Q7L9B9 569 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 BLIDQ8IZY5 108 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 PHF20Q9BVI0 1012 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 DDX20Q9UHI6 824 aaKnown RBP12.44□□□□□ -0.42
SHMT2-218ENST00000555213 FAM184BQ9ULE4 1060 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 KCNJ14Q9UNX9 436 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 SMCHD1A6NHR9 2005 aa12.44□□□□□ -0.42
SHMT2-218ENST00000555213 LCTP09848 1927 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 ZNFX1Q9P2E3 1918 aaKnown RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 CCDC194A0A1B0GVG4 234 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 ZNF865P0CJ78 1059 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 RARBP10826 455 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 CAPN2P17655 700 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 CCND3P30281 292 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 CLK2P49760 499 aaKnown RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 GNL2Q13823 731 aaKnown RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 MTFR1Q15390 333 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 KRT25Q7Z3Z0 450 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 SCFD2Q8WU76 684 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 PAK6Q9NQU5 681 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-218ENST00000555213 LMBRD1Q9NUN5 540 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 TMEM260Q9NX78 707 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 TCHHQ07283 1943 aa12.43□□□□□ -0.42
SHMT2-218ENST00000555213 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 H3BQV1 296 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 MMP1P03956 469 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 GJB1P08034 283 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 U2AF2P26368 475 aaKnown RBP eCLIP12.42□□□□□ -0.42
SHMT2-218ENST00000555213 SREBF1P36956 1147 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 DNM1Q05193 864 aaKnown RBP12.42□□□□□ -0.42
SHMT2-218ENST00000555213 TTLL4Q14679 1199 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 CCDC144BQ3MJ40 725 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 FOXD4L6Q3SYB3 417 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-218ENST00000555213 PRAMEF19Q5SWL8 479 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 KCNV1Q6PIU1 500 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 FOXD4L3Q6VB84 417 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-218ENST00000555213 NLRX1Q86UT6 975 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 VSIG10LQ86VR7 867 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 TRPV1Q8NER1 839 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 IL31RAQ8NI17 732 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 CDHR1Q96JP9 859 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 DEFB118Q96PH6 123 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 SPC25Q9HBM1 224 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 MRVI1Q9Y6F6 885 aa12.42□□□□□ -0.42
SHMT2-218ENST00000555213 NKRFO15226 690 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 ZNF76P36508 570 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 ARHGAP4P98171 946 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 TNFAIP2Q03169 654 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 NONOQ15233 471 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 MCTP1Q6DN14 999 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 IQSEC1Q6DN90 963 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 SEPT14Q6ZU15 432 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 DIS3L2Q8IYB7 885 aaKnown RBP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 RASGRP4Q8TDF6 673 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 OXER1Q8TDS5 423 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 U2AF1L4Q8WU68 220 aaKnown RBP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 PGBD1Q96JS3 809 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 GBP4Q96PP9 640 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 WDR11Q9BZH6 1224 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 KATNBL1Q9H079 304 aa12.41□□□□□ -0.42
SHMT2-218ENST00000555213 ZSCAN16Q9H4T2 348 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 TFIP11Q9UBB9 837 aaKnown RBP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 DDX49Q9Y6V7 483 aaKnown RBP12.41□□□□□ -0.42
SHMT2-218ENST00000555213 BTBD18B2RXH4 712 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 FIBPO43427 364 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 DUSP11O75319 330 aaKnown RBP12.4□□□□□ -0.42
SHMT2-218ENST00000555213 TXNP10599 105 aaKnown RBP12.4□□□□□ -0.42
SHMT2-218ENST00000555213 ADCYAP1R1P41586 468 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 MTMR1Q13613 665 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 TAPT1Q6NXT6 567 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 TMEM87AQ8NBN3 555 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 TNFRSF25Q93038 417 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 GPRASP2Q96D09 838 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 INPP4AQ96PE3 977 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-218ENST00000555213 NAP1L4Q99733 375 aaKnown RBP12.4□□□□□ -0.42
SHMT2-218ENST00000555213 AP5M1Q9H0R1 490 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 XPNPEP3Q9NQH7 507 aa12.4□□□□□ -0.42
SHMT2-218ENST00000555213 RBM47A0AV96 593 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms