RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 CIAO1O76071 339 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 ACTN1P12814 892 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 HSD17B3P37058 310 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 TXNRD1Q16881 649 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 KLHDC7AQ5VTJ3 777 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 TAF4BQ92750 862 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 DYNLL2Q96FJ2 89 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 SEC16BQ96JE7 1060 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 ELAC2Q9BQ52 826 aaKnown RBP9.8□□□□□ -0.84
SYNE2-217ENST00000555022 UBA5Q9GZZ9 404 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 MTFR1LQ9H019 292 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 KIF9Q9HAQ2 790 aa9.8□□□□□ -0.84
SYNE2-217ENST00000555022 PDS5AQ29RF7 1337 aaKnown RBP9.79□□□□□ -0.84
SYNE2-217ENST00000555022 MAGEB6P1A0A0J9YX57 407 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 CHRM1P11229 460 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-217ENST00000555022 SLC51AQ86UW1 340 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 CACNA2D3Q8IZS8 1091 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 FUKQ8N0W3 1084 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 SLC44A5Q8NCS7 719 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 RAPGEF5Q92565 580 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 ZBTB10Q96DT7 871 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 ARPP21Q9UBL0 812 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-217ENST00000555022 TRIM33Q9UPN9 1127 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 TMEM110-MUSTN1A8MSY1 372 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 CTNND1O60716 968 aaKnown RBP9.79□□□□□ -0.84
SYNE2-217ENST00000555022 SCTRP47872 440 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 CTSWP56202 376 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 ZNF211Q13398 564 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-217ENST00000555022 NPY5RQ15761 445 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 EMBQ6PCB8 327 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 CABP7Q86V35 215 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 FBXL16Q8N461 479 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 MMGT1Q8N4V1 131 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 SPDL1Q96EA4 605 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 ADAM33Q9BZ11 813 aa9.79□□□□□ -0.84
SYNE2-217ENST00000555022 SCG2P13521 617 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 MIIPQ5JXC2 388 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SLC17A8Q8NDX2 589 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 NSMCE1Q8WV22 266 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 RNF26Q9BY78 433 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 NDST4Q9H3R1 872 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 GMNCA6NCL1 334 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 USP17L3A6NCW0 530 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 USP17L4A6NCW7 530 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TRAF5O00463 557 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 CLGNO14967 610 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 FSBPO95073 299 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SLC5A1P13866 664 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 YY1P25490 414 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 FAM47EQ6ZV65 393 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 USP17L1Q7RTZ2 530 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 CCDC170Q8IYT3 715 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SPICE1Q8N0Z3 855 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 THEMISQ8N1K5 641 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SEMA6BQ9H3T3 888 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TFCP2L1Q9NZI6 479 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 POTEMA6NI47 508 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SEMA3EO15041 775 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TTI1O43156 1089 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 MARCH6O60337 910 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TCP1P17987 556 aaKnown RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 ABCB4P21439 1286 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 EPS15P42566 896 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TUBB4BP68371 445 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TCERG1LQ5VWI1 586 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 ALS2CLQ60I27 953 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 KDM7AQ6ZMT4 941 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 FNBP4Q8N3X1 1017 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 RPGRIP1Q96KN7 1286 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 TMEM260Q9NX78 707 aa9.78□□□□□ -0.84
SYNE2-217ENST00000555022 BIN2Q9UBW5 565 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 SAP30BPQ9UHR5 308 aaKnown RBP9.78□□□□□ -0.84
SYNE2-217ENST00000555022 KDM3BQ7LBC6 1761 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 MRC1P22897 1456 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 AFDNP55196 1824 aaKnown RBP9.77□□□□□ -0.84
SYNE2-217ENST00000555022 A0A087X0T9 212 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 NPHP3-ACAD11A0A0J9YXS1 232 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 LRRC10BA6NIK2 292 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 KLRC4O43908 158 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 DIAPH2O60879 1101 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 FAM228BP0C875 321 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 EEF1GP26641 437 aaKnown RBP9.77□□□□□ -0.84
SYNE2-217ENST00000555022 EIF6P56537 245 aaKnown RBP9.77□□□□□ -0.84
SYNE2-217ENST00000555022 ANKRD20A8PQ5CZ79 823 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 SOGA3Q5TF21 947 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 BLIDQ8IZY5 108 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 ANKRD42Q8N9B4 389 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 CDK5RAP3Q96JB5 506 aa9.77□□□□□ -0.84
SYNE2-217ENST00000555022 RIC1Q4ADV7 1423 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 FAM107AO95990 144 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 SHBGP04278 402 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 ZNF844Q08AG5 666 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 ITGB3BPQ13352 177 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-217ENST00000555022 UAP1Q16222 522 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-217ENST00000555022 PREPLQ4J6C6 727 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-217ENST00000555022 TMTC3Q6ZXV5 915 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 IQCKQ8N0W5 287 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 FGFBP2Q9BYJ0 223 aa9.77□□□□□ -0.85
SYNE2-217ENST00000555022 TRIM6Q9C030 488 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-217ENST00000555022 LTN1O94822 1766 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms