RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MFSD5Q6N075 450 aa18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 SYNE3Q6ZMZ3 975 aa18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 LRRC2Q9BYS8 371 aa18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 DDX41Q9UJV9 622 aaKnown RBP18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 NID2Q14112 1375 aa18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 RGS20O76081 388 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 HOXD8P13378 290 aaPredicted RBP18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 CCND2P30279 289 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 FPGSQ05932 587 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 PTPN11Q06124 597 aaPredicted RBP18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 XRRA1Q6P2D8 792 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 NFRKBQ6P4R8 1299 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 SEPT14Q6ZU15 432 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 MICU3Q86XE3 530 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 COPS5Q92905 334 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 AGXT2Q9BYV1 514 aa18.52■□□□□ 0.56
CCDC88C-209ENST00000554872 CNTNAP5Q8WYK1 1306 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 MEIS2O14770 477 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 ZBTB43O43298 467 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 FUT2Q10981 343 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 IL31RAQ8NI17 732 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 INPP4AQ96PE3 977 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 ALDH8A1Q9H2A2 487 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 SNX14Q9Y5W7 946 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 MRVI1Q9Y6F6 885 aa18.51■□□□□ 0.55
CCDC88C-209ENST00000554872 hCG_1984214I3L0E3 225 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 MMP3P08254 477 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 RXRAP19793 462 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 LAMC2Q13753 1193 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 LY6KQ17RY6 165 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 SESTD1Q86VW0 696 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 ZNF713Q8N859 430 aaPredicted RBP18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 PPTC7Q8NI37 304 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 CUL5Q93034 780 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 LRCH3Q96II8 777 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 BRPF3Q9ULD4 1205 aa18.5■□□□□ 0.55
CCDC88C-209ENST00000554872 B4GALT4O60513 344 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 MYL3P08590 195 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 SUPT20HL2P0C7V6 817 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 ICAM3P32942 547 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 PSMC6P62333 389 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 PPIGQ13427 754 aaKnown RBP eCLIP18.49■□□□□ 0.552e-7■■■□□ 16.3
CCDC88C-209ENST00000554872 SHHQ15465 462 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 RTN1Q16799 776 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 GNPTABQ3T906 1256 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 PCNX4Q63HM2 1172 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 FAM109BQ6ICB4 259 aaPredicted RBP18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 PPP1R18Q6NYC8 613 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 AFG1LQ8WV93 481 aa18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 NOC4LQ9BVI4 516 aaKnown RBP18.49■□□□□ 0.55
CCDC88C-209ENST00000554872 CENPBP07199 599 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 PSMA5P28066 241 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 EPHB4P54760 987 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 MRPS9P82933 396 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 DGKDQ16760 1214 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 C9orf50Q5SZB4 431 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 CELF3Q5SZQ8 465 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 BLOC1S2Q6QNY1 142 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 FCHSD1Q86WN1 690 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 CMTR1Q8N1G2 835 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 TMEM199Q8N511 208 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 PIBF1Q8WXW3 757 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 TCEANC2Q96MN5 208 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 JAKMIP1Q96N16 626 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 HIPK3Q9H422 1215 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 PSTPIP2Q9H939 334 aa18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 FAM217BQ9NTX9 383 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-209ENST00000554872 KLF18A0A0U1RQI7 1052 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 CCDC196A0A1B0GTZ2 297 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 F2P00734 622 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 MYCLP12524 364 aaPredicted RBP18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 CASTP20810 708 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 RPS6KB1P23443 525 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 EVCP57679 992 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 SMAD3P84022 425 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 NBPF20Q3BBV1 942 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 MYSM1Q5VVJ2 828 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 SMARCC2Q8TAQ2 1214 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 TRPV6Q9H1D0 765 aa18.47■□□□□ 0.55
CCDC88C-209ENST00000554872 GOLGA8AA7E2F4 631 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 GOLGA8BA8MQT2 603 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 FIBPO43427 364 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 PPFIA4O75335 1185 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 UBA1P22314 1058 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 RASIP1Q5U651 963 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 USP17L6PQ6QN14 398 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 RAB11FIP4Q86YS3 637 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 DHX37Q8IY37 1157 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 KAT2BQ92831 832 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 KATNAL1Q9BW62 490 aa18.46■□□□□ 0.55
CCDC88C-209ENST00000554872 SPATA31C2B4DYI2 1134 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 HAS3O00219 553 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 PITPNM1O00562 1244 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 SP2Q02086 613 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 PSRC1Q6PGN9 363 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 Q6ZUG5 572 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 SENP7Q9BQF6 1050 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 USP26Q9BXU7 913 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 TM6SF1Q9BZW5 370 aa18.45■□□□□ 0.54
CCDC88C-209ENST00000554872 GLT8D2Q9H1C3 349 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms