RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 KPNA6O60684 536 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 GH1P01241 217 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 PFKMP08237 780 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 IQCF3P0C7M6 154 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 ATP2A2P16615 1042 aaKnown RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 HSD17B4P51659 736 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 GHRHRQ02643 423 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 PTH1RQ03431 593 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 GPNMBQ14956 572 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 BRDTQ58F21 947 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 GDF6Q6KF10 455 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 IL31RAQ8NI17 732 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 NSUN6Q8TEA1 469 aaKnown RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 MPHOSPH6Q99547 160 aaKnown RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 UBAC1Q9BSL1 405 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 KRT23Q9C075 422 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 MAF1Q9H063 256 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 SLC28A3Q9HAS3 691 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 PXMP2Q9NR77 195 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 CTNNA3Q9UI47 895 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 MAD2L2Q9UI95 211 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 MRPL11Q9Y3B7 192 aaKnown RBP12.31□□□□□ -0.44
SHMT2-215ENST00000554656 PCDHA11Q9Y5I1 949 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 TCF20Q9UGU0 1960 aaKnown RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 PALM3A6NDB9 673 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 EPOPA6NHQ4 379 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 DHX16O60231 1041 aaKnown RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 CDC45O75419 566 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 RGS20O76081 388 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 IGFBP4P22692 258 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 CHMP4BP1P59074 171 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 PTPN11Q06124 597 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 CCDC85BQ15834 202 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 TCTN1Q2MV58 587 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 TJAP1Q5JTD0 557 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 IFIT1BQ5T764 474 aaKnown RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 PPP2R2DQ66LE6 453 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 CHST3Q7LGC8 479 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 SPRED2Q7Z698 418 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 MCF2L2Q86YR7 1114 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 IWS1Q96ST2 819 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 CNNM2Q9H8M5 875 aa12.3□□□□□ -0.44
SHMT2-215ENST00000554656 DDX41Q9UJV9 622 aaKnown RBP12.3□□□□□ -0.44
SHMT2-215ENST00000554656 MICAL3Q7RTP6 2002 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 B4DLN1 442 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 KLRF2D3W0D1 207 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 RFXAPO00287 272 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 CFBP00751 764 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 CA3P07451 260 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 NR3C2P08235 984 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 CYP21A2P08686 494 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 ZNF286BP0CG31 522 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 RFC2P35250 354 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 MRPL12P52815 198 aaKnown RBP12.29□□□□□ -0.44
SHMT2-215ENST00000554656 STXBP2Q15833 593 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 PTGISQ16647 500 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 STOX1Q6ZVD7 989 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 WNT8BQ93098 351 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 EMID1Q96A84 441 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-215ENST00000554656 PDCD2LQ9BRP1 358 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 UPF2Q9HAU5 1272 aaKnown RBP12.29□□□□□ -0.44
SHMT2-215ENST00000554656 XIRP2A4UGR9 3374 aa12.29□□□□□ -0.44
SHMT2-215ENST00000554656 BDP1A6H8Y1 2624 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 HAS3O00219 553 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 CYTH3O43739 400 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 EIF3JO75822 258 aaKnown RBP12.28□□□□□ -0.44
SHMT2-215ENST00000554656 F2P00734 622 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 HOXD8P13378 290 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-215ENST00000554656 CHMLP26374 656 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 HOXA13P31271 388 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-215ENST00000554656 RBL2Q08999 1139 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 BFSP2Q13515 415 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 HIC1Q14526 733 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 GRM4Q14833 912 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 TRIM71Q2Q1W2 868 aaKnown RBP12.28□□□□□ -0.44
SHMT2-215ENST00000554656 ARHGEF16Q5VV41 709 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 GPKOWQ92917 476 aaPredicted RBP eCLIP12.28□□□□□ -0.44
SHMT2-215ENST00000554656 AMNQ9BXJ7 453 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 THEGQ9P2T0 379 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 HDAC6Q9UBN7 1215 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 GTF2IRD1Q9UHL9 959 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 BRWD1Q9NSI6 2320 aa12.28□□□□□ -0.44
SHMT2-215ENST00000554656 SIP14410 1827 aa12.27□□□□□ -0.44
SHMT2-215ENST00000554656 ZBTB5O15062 677 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 SORBS3O60504 671 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 NBNO60934 754 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 PSEN2P49810 448 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 ANTXR2P58335 489 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 SP2Q02086 613 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 TAP1Q03518 808 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 DGKDQ16760 1214 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 TMEM67Q5HYA8 995 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 KRT40Q6A162 431 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 TRAF7Q6Q0C0 670 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 CASC1Q6TDU7 716 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 TMCO2Q7Z6W1 182 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-215ENST00000554656 HOMER1Q86YM7 354 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 HERC6Q8IVU3 1022 aa12.27□□□□□ -0.45
SHMT2-215ENST00000554656 RETREG2Q8NC44 543 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms