RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 B4DLN1 442 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 EIF3JO75822 258 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 ITGB8P26012 769 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 MRPL12P52815 198 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 MRPS9P82933 396 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 TRAF1Q13077 416 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 FBXL16Q8N461 479 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 SMARCC2Q8TAQ2 1214 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 PHKBQ93100 1093 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 GLT1D1Q96MS3 346 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 MPHOSPH6Q99547 160 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 GDF15Q99988 308 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 TM6SF1Q9BZW5 370 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 PSTPIP2Q9H939 334 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 PDRG1Q9NUG6 133 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 MAP3K20Q9NYL2 800 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 RTEL1Q9NZ71 1219 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 Q9Y3F1 56 aa13.35□□□□□ -0.27
CCDC88C-208ENST00000554165 RBAK-RBAKDNI3L0D1 243 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 STXBP3O00186 592 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 MYL3P08590 195 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 CDK7P50613 346 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 SP2Q02086 613 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 ARHGAP1Q07960 439 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 TTLL4Q14679 1199 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 C1orf53Q5VUE5 145 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 SAMD3Q8N6K7 520 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 AFG1LQ8WV93 481 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 DDX41Q9UJV9 622 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 TELO2Q9Y4R8 837 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 KIAA1217Q5T5P2 1943 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 ELP1O95163 1332 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 FRMPD4Q14CM0 1322 aa13.34□□□□□ -0.27
CCDC88C-208ENST00000554165 ARVCFO00192 962 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 PIK3CDO00329 1044 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 CCND2P30279 289 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 RCAN1P53805 252 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 NAPAP54920 295 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 EVCP57679 992 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 PURAQ00577 322 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 FAAP100Q0VG06 881 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 STK3Q13188 491 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 SEMA3FQ13275 785 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 NTRK3Q16288 839 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 PKN1Q16512 942 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 CUL5Q93034 780 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 PGBD1Q96JS3 809 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 MRVI1Q9Y6F6 885 aa13.33□□□□□ -0.28
CCDC88C-208ENST00000554165 A0A0U1RQG5 324 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 A6NJR5 290 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 NKRFO15226 690 aaKnown RBP eCLIP13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 GH1P01241 217 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 CLTBP09497 229 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 CHMP4BP1P59074 171 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 ITGA7Q13683 1181 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 C8orf34Q49A92 452 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 ANKRD33Q7Z3H0 272 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 SLC43A3Q8NBI5 491 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 BADQ92934 168 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 TRPV6Q9H1D0 765 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 TMEM260Q9NX78 707 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 BARHL2Q9NY43 387 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 NID2Q14112 1375 aa13.32□□□□□ -0.28
CCDC88C-208ENST00000554165 CCDC196A0A1B0GTZ2 297 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 ZEB2O60315 1214 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 MMP3P08254 477 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 SCG2P13521 617 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 UBA1P22314 1058 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 PFKFB3Q16875 520 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 FAM126BQ8IXS8 530 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 INPP4AQ96PE3 977 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 SLC26A6Q9BXS9 759 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 UBE2OQ9C0C9 1292 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 RIC8AQ9NPQ8 531 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 TMEM39AQ9NV64 488 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 PCDHA6Q9UN73 950 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 PCDHA8Q9Y5H6 950 aa13.31□□□□□ -0.28
CCDC88C-208ENST00000554165 SMCO2A6NFE2 343 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 DCDC2CA8MYV0 355 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 KIAA0355O15063 1070 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 PRPF3O43395 683 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 GGPS1O95749 300 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 IFNAR1P17181 557 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 ITGB5P18084 799 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 CPT1AP50416 773 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 ADCY7P51828 1080 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 EPHB4P54760 987 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 NBPF20Q3BBV1 942 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 HSDL1Q3SXM5 330 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 CELF3Q5SZQ8 465 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 MYSM1Q5VVJ2 828 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 PCNX4Q63HM2 1172 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 PPP4R3CPQ6ZMV5 832 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 DHX37Q8IY37 1157 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 KAT2BQ92831 832 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 TOX2Q96NM4 488 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 MTG1Q9BT17 334 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 PRKAG2Q9UGJ0 569 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 TBX21Q9UL17 535 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 TPCN1Q9ULQ1 816 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms