RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 hCG_1642624A0A1W2PR95 340 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 A6NJR5 290 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 MEIS2O14770 477 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 ITGA7Q13683 1181 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 TTLL4Q14679 1199 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 PGM5Q15124 567 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 LY6KQ17RY6 165 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 SYNE3Q6ZMZ3 975 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 FCHSD1Q86WN1 690 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 FAM126BQ8IXS8 530 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 TDHQ8IZJ6 230 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 FBXL16Q8N461 479 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 CCDC82Q8N4S0 544 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 OR6J1Q8NGC5 347 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 BADQ92934 168 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 LBHD1Q9BQE6 289 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 AGXT2Q9BYV1 514 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 DDX41Q9UJV9 622 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 TBX21Q9UL17 535 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 LAMA2P24043 3122 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 MCM3APO60318 1980 aa11.87□□□□□ -0.51
CCDC88C-206ENST00000553437 FRMPD4Q14CM0 1322 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 KLF18A0A0U1RQI7 1052 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 DCDC2CA8MYV0 355 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 PIK3CDO00329 1044 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 SOX1O00570 391 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 ZBTB43O43298 467 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 CD4P01730 458 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 RPS6KB1P23443 525 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 CDC27P30260 824 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 CPT1AP50416 773 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 RCAN1P53805 252 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 PSMC6P62333 389 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 PURAQ00577 322 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 ARHGAP1Q07960 439 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 RTN1Q16799 776 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 USP17L6PQ6QN14 398 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 BLOC1S2Q6QNY1 142 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 Q6ZUG5 572 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 TMEM39AQ9NV64 488 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 POLR3EQ9NVU0 708 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 RBM28Q9NW13 759 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 SEC63Q9UGP8 760 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 MROH7Q68CQ1 1323 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 CNTNAP5Q8WYK1 1306 aa11.86□□□□□ -0.51
CCDC88C-206ENST00000553437 GOLGA8AA7E2F4 631 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 GOLGA8BA8MQT2 603 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 GH1P01241 217 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 MYL3P08590 195 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 MYCLP12524 364 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 MRPS9P82933 396 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 APOBRQ0VD83 1088 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 LRIT3Q3SXY7 679 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 AFG1LQ8WV93 481 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 BRF1Q92994 677 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 ZFP91Q96JP5 570 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 SEZ6LQ9BYH1 1024 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 ZSWIM6Q9HCJ5 1215 aa11.85□□□□□ -0.51
CCDC88C-206ENST00000553437 KPNA6O60684 536 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 TIMP1P01033 207 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 CASTP20810 708 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 PSMA5P28066 241 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 CCND2P30279 289 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 ADD1P35611 737 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 EPHB4P54760 987 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 EVCP57679 992 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 SP2Q02086 613 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 WWC2Q6AWC2 1192 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 TYW1BQ6NUM6 668 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 GPKOWQ92917 476 aaPredicted RBP eCLIP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 EMID1Q96A84 441 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 MTG1Q9BT17 334 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 TRPV6Q9H1D0 765 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 PSTPIP2Q9H939 334 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 MRVI1Q9Y6F6 885 aa11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 V9GY48 417 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-206ENST00000553437 B4GALT4O60513 344 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 MMP3P08254 477 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 RAG1P15918 1043 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 FGD1P98174 961 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 LAMC2Q13753 1193 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 SHHQ15465 462 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 BRDTQ58F21 947 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 C9orf50Q5SZB4 431 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 KCNV1Q6PIU1 500 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 RUFY3Q7L099 469 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 HEATR3Q7Z4Q2 680 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 SMARCC2Q8TAQ2 1214 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 KAT2BQ92831 832 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 CUL5Q93034 780 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 LRCH3Q96II8 777 aa11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 INPP4AQ96PE3 977 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 ALDH8A1Q9H2A2 487 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-206ENST00000553437 BAZ2BQ9UIF8 2168 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 NID2Q14112 1375 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 SPATA31C2B4DYI2 1134 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 TLR3O15455 904 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 STAM2O75886 525 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 TGFB3P10600 412 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 HOXD8P13378 290 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms