RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 FAM217BQ9NTX9 383 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-204ENST00000553324 DDX41Q9UJV9 622 aaKnown RBP17.65■□□□□ 0.42
SHMT2-204ENST00000553324 MRVI1Q9Y6F6 885 aa17.65■□□□□ 0.42
SHMT2-204ENST00000553324 A6NJR5 290 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 MEIS2O14770 477 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 PQBP1O60828 265 aaKnown RBP17.64■□□□□ 0.41
SHMT2-204ENST00000553324 CLTBP09497 229 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 CDC27P30260 824 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 LAMC2Q13753 1193 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 GNPTABQ3T906 1256 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 PPP1R18Q6NYC8 613 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 USP17L6PQ6QN14 398 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 PRDM5Q9NQX1 630 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-204ENST00000553324 MCM3APO60318 1980 aa17.64■□□□□ 0.41
SHMT2-204ENST00000553324 BAZ2BQ9UIF8 2168 aaKnown RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 hCG_1642624A0A1W2PR95 340 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 SPDYE3A6NKU9 549 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 TLR3O15455 904 aaKnown RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 MAGEA10P43363 369 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 AKAP17AQ02040 695 aaKnown RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 ITGA7Q13683 1181 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 LY6KQ17RY6 165 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 SLC43A3Q8NBI5 491 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 EMID1Q96A84 441 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 ZNF274Q96GC6 653 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 MTG1Q9BT17 334 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-204ENST00000553324 EHMT1Q9H9B1 1298 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 PDRG1Q9NUG6 133 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 TMEM39AQ9NV64 488 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 FRMPD4Q14CM0 1322 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 CNTNAP5Q8WYK1 1306 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 CEP290O15078 2479 aa17.63■□□□□ 0.41
SHMT2-204ENST00000553324 ARIH2O95376 493 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 PDIA3P30101 505 aaKnown RBP17.62■□□□□ 0.41
SHMT2-204ENST00000553324 NAPAP54920 295 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 PURAQ00577 322 aaKnown RBP17.62■□□□□ 0.41
SHMT2-204ENST00000553324 PCNX4Q63HM2 1172 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 DHX37Q8IY37 1157 aaKnown RBP17.62■□□□□ 0.41
SHMT2-204ENST00000553324 CCDC12Q8WUD4 166 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-204ENST00000553324 COPS5Q92905 334 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 UBE2OQ9C0C9 1292 aaKnown RBP17.62■□□□□ 0.41
SHMT2-204ENST00000553324 PDLIM7Q9NR12 457 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 BARHL2Q9NY43 387 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 NID2Q14112 1375 aa17.62■□□□□ 0.41
SHMT2-204ENST00000553324 MYH6P13533 1939 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 KIAA0355O15063 1070 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 PRPF3O43395 683 aaKnown RBP17.61■□□□□ 0.41
SHMT2-204ENST00000553324 FOSP01100 380 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-204ENST00000553324 MYL3P08590 195 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 PTGS1P23219 599 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 FAAP100Q0VG06 881 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 PFKFB3Q16875 520 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-204ENST00000553324 WWC2Q6AWC2 1192 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 NLRX1Q86UT6 975 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 GPKOWQ92917 476 aaPredicted RBP eCLIP17.61■□□□□ 0.41
SHMT2-204ENST00000553324 ALDH8A1Q9H2A2 487 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-204ENST00000553324 RIC8AQ9NPQ8 531 aa17.61■□□□□ 0.41
SHMT2-204ENST00000553324 LCTP09848 1927 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 TRIM43BA6NCK2 446 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 SMCO2A6NFE2 343 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 RGS20O76081 388 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 SCG2P13521 617 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 RAG1P15918 1043 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 IFNAR1P17181 557 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 ICAM3P32942 547 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 MDM2Q00987 491 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 ARHGAP1Q07960 439 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 TOB2Q14106 344 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 ANKRD1Q15327 319 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 DGKDQ16760 1214 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 MCTP2Q6DN12 878 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 CPLX2Q6PUV4 134 aaKnown RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 IL31RAQ8NI17 732 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 PPTC7Q8NI37 304 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 AFG1LQ8WV93 481 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 TRIM43Q96BQ3 446 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 CDHR1Q96JP9 859 aa17.6■□□□□ 0.41
SHMT2-204ENST00000553324 INPP4AQ96PE3 977 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 RNF26Q9BY78 433 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 UPF3BQ9BZI7 483 aaKnown RBP17.6■□□□□ 0.41
SHMT2-204ENST00000553324 STXBP3O00186 592 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 MAFGO15525 162 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 FIBPO43427 364 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 PPFIA4O75335 1185 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 SUPT20HL2P0C7V6 817 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 ADCY7P51828 1080 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 MRPS9P82933 396 aaKnown RBP17.59■□□□□ 0.41
SHMT2-204ENST00000553324 NEDD9Q14511 834 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 CELF3Q5SZQ8 465 aaKnown RBP17.59■□□□□ 0.41
SHMT2-204ENST00000553324 SH3RF1Q7Z6J0 888 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 FAM126BQ8IXS8 530 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 MLXIPQ9HAP2 919 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 PCDHA6Q9UN73 950 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 PCDHA8Q9Y5H6 950 aa17.59■□□□□ 0.41
SHMT2-204ENST00000553324 RANBP2P49792 3224 aaKnown RBP17.59■□□□□ 0.41
SHMT2-204ENST00000553324 GRIN2DO15399 1336 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 SPATA31C2B4DYI2 1134 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 CPLX1O14810 134 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 TIMP1P01033 207 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 CD4P01730 458 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms