RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 ASPRV1Q53RT3 343 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 CCDC155Q8N6L0 562 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 ENAHQ8N8S7 591 aaPredicted RBP13.83□□□□□ -0.2
CKAP4-202ENST00000552828 ZSCAN10Q96SZ4 725 aaPredicted RBP13.83□□□□□ -0.2
CKAP4-202ENST00000552828 RMDN3Q96TC7 470 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 FTOQ9C0B1 505 aaKnown RBP eCLIP13.83□□□□□ -0.26e-6■□□□□ 8.1
CKAP4-202ENST00000552828 KAT14Q9H8E8 782 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 DDX41Q9UJV9 622 aaKnown RBP13.83□□□□□ -0.2
CKAP4-202ENST00000552828 NOD1Q9Y239 953 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 GBF1Q92538 1859 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 KIF28PB7ZC32 967 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 RFXAPO00287 272 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 GTPBP6O43824 516 aaPredicted RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 EIF3JO75822 258 aaKnown RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 ARHGEF15O94989 841 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 PARNO95453 639 aaKnown RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 CXCL10P02778 98 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 SELPP16109 830 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 COL9A1P20849 921 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 GHRHRQ02643 423 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 TFF2Q03403 129 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 DGKDQ16760 1214 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 QRICH1Q2TAL8 776 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 TTC22Q5TAA0 569 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 GDF6Q6KF10 455 aaPredicted RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 SEPT14Q6ZU15 432 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 IL27Q8NEV9 243 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 DHX38Q92620 1227 aaKnown RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 JMJD4Q9H9V9 463 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 PPP4R2Q9NY27 417 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 ZSWIM5Q9P217 1185 aa13.82□□□□□ -0.2
CKAP4-202ENST00000552828 MRPL11Q9Y3B7 192 aaKnown RBP13.82□□□□□ -0.2
CKAP4-202ENST00000552828 PARP1P09874 1014 aaKnown RBP13.81□□□□□ -0.2
CKAP4-202ENST00000552828 HOXD8P13378 290 aaPredicted RBP13.81□□□□□ -0.2
CKAP4-202ENST00000552828 WDR5P61964 334 aaKnown RBP13.81□□□□□ -0.2
CKAP4-202ENST00000552828 FBXO11Q86XK2 927 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 MICALL1Q8N3F8 863 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 DSCC1Q9BVC3 393 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 CERS4Q9HA82 394 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 GTF2IRD1Q9UHL9 959 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 COG5Q9UP83 839 aa13.81□□□□□ -0.2
CKAP4-202ENST00000552828 B4E1Z4 1266 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 HAS3O00219 553 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 HIP1O00291 1037 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 OPLAHO14841 1288 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 LPXNO60711 386 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 F2P00734 622 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 NR3C2P08235 984 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 HSD17B4P51659 736 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 LAMC2Q13753 1193 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 ARHGEF16Q5VV41 709 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 CWC27Q6UX04 472 aaKnown RBP13.8□□□□□ -0.2
CKAP4-202ENST00000552828 LRRC8DQ7L1W4 858 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 PPTC7Q8NI37 304 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 ARNTL2Q8WYA1 636 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 MTMR8Q96EF0 704 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 PXMP2Q9NR77 195 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 MAP3K20Q9NYL2 800 aaKnown RBP13.8□□□□□ -0.2
CKAP4-202ENST00000552828 PRRC2BQ5JSZ5 2229 aaKnown RBP13.8□□□□□ -0.2
CKAP4-202ENST00000552828 SCN5AQ14524 2016 aa13.8□□□□□ -0.2
CKAP4-202ENST00000552828 TLL1O43897 1013 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 NBNO60934 754 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 PPFIA4O75335 1185 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CKBP12277 381 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 EIF2AK2P19525 551 aaKnown RBP13.79□□□□□ -0.2
CKAP4-202ENST00000552828 KCNJ6P48051 423 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 PSEN2P49810 448 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 KCNQ1P51787 676 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CHMP4BP1P59074 171 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 PTK7Q13308 1070 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 GRB10Q13322 594 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 IMMTQ16891 758 aaKnown RBP13.79□□□□□ -0.2
CKAP4-202ENST00000552828 TRIM71Q2Q1W2 868 aaKnown RBP13.79□□□□□ -0.2
CKAP4-202ENST00000552828 KRT40Q6A162 431 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CNKSR3Q6P9H4 555 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 TRAF7Q6Q0C0 670 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 STOX1Q6ZVD7 989 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CHST3Q7LGC8 479 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 SAMD3Q8N6K7 520 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 C7orf31Q8N865 590 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 NECAB3Q96P71 396 aaPredicted RBP13.79□□□□□ -0.2
CKAP4-202ENST00000552828 KATNAL1Q9BW62 490 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 AMNQ9BXJ7 453 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 KRT23Q9C075 422 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CNNM2Q9H8M5 875 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 DIAPH3Q9NSV4 1193 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 LMCD1Q9NZU5 365 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 HDAC6Q9UBN7 1215 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 CTNNA3Q9UI47 895 aa13.79□□□□□ -0.2
CKAP4-202ENST00000552828 TANC1Q9C0D5 1861 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 ABHD14A-ACY1A0A1B0GW23 586 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 EFCAB14O75071 495 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 RGS20O76081 388 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 GSPT1P15170 499 aaKnown RBP13.78□□□□□ -0.2
CKAP4-202ENST00000552828 MFSD10Q14728 455 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 SKIV2LQ15477 1246 aaKnown RBP13.78□□□□□ -0.2
CKAP4-202ENST00000552828 MYSM1Q5VVJ2 828 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 KCNV1Q6PIU1 500 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 SPRED2Q7Z698 418 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 VSIG10LQ86VR7 867 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms