RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MTMR9Q96QG7 549 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 RMDN3Q96TC7 470 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 HOMER2Q9NSB8 354 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 CEP131Q9UPN4 1083 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 PCDHB6Q9Y5E3 794 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 ASB14A6NK59 587 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 GPR25O00155 361 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 WNT7AO00755 349 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 COBLO75128 1261 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 TRPA1O75762 1119 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 ADORA2AP29274 412 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 CTGFP29279 349 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 MRPS9P82933 396 aaKnown RBP10.89□□□□□ -0.67
LIMA1-211ENST00000552338 CNTN2Q02246 1040 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 MAP2K5Q13163 448 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 SF3A1Q15459 793 aaKnown RBP10.89□□□□□ -0.67
LIMA1-211ENST00000552338 CEP55Q53EZ4 464 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 FCHSD1Q86WN1 690 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 FAM20AQ96MK3 541 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 MXRA8Q9BRK3 442 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 KCNMB3Q9NPA1 279 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 JADE2Q9NQC1 790 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 SLC5A4Q9NY91 659 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 IVNS1ABPQ9Y6Y0 642 aa10.89□□□□□ -0.67
LIMA1-211ENST00000552338 SYNGAP1Q96PV0 1343 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 RBM47A0AV96 593 aaKnown RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 FAM86B1E9PN63 330 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 EIF3JO75822 258 aaKnown RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 TBC1D8O95759 1140 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 FAM86B2P0C5J1 330 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 TGFB3P10600 412 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 PRMT2P55345 433 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 FCGRTP55899 365 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 SETQ01105 290 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 GRM1Q13255 1194 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 STXBP2Q15833 593 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 ARHGEF16Q5VV41 709 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 OLFML2BQ68BL8 750 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 B3GNT9Q6UX72 402 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 ZNF579Q8NAF0 562 aaKnown RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 KCNG4Q8TDN1 519 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 LEO1Q8WVC0 666 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 GPRASP2Q96D09 838 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 PGBD1Q96JS3 809 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 GBP4Q96PP9 640 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 MPHOSPH6Q99547 160 aaKnown RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 NUDT12Q9BQG2 462 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 SRPRBQ9Y5M8 271 aaKnown RBP10.88□□□□□ -0.67
LIMA1-211ENST00000552338 CLIC4Q9Y696 253 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 ZSWIM8A7E2V4 1837 aa10.88□□□□□ -0.67
LIMA1-211ENST00000552338 CCNT1O60563 726 aaKnown RBP10.87□□□□□ -0.67
LIMA1-211ENST00000552338 RGS20O76081 388 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 ITGB5P18084 799 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 CCND2P30279 289 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 RGS2P41220 211 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 PTGDRQ13258 359 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 PDIA5Q14554 519 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 LETM2Q2VYF4 491 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 ADALQ6DHV7 355 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 KCNV1Q6PIU1 500 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 CCAR1Q8IX12 1150 aaKnown RBP10.87□□□□□ -0.67
LIMA1-211ENST00000552338 TRMT44Q8IYL2 757 aaKnown RBP10.87□□□□□ -0.67
LIMA1-211ENST00000552338 SLFN12Q8IYM2 578 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 ETNPPLQ8TBG4 499 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 HAS1Q92839 578 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 FERMT2Q96AC1 680 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 ERO1AQ96HE7 468 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 MAML3Q96JK9 1138 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 CDHR1Q96JP9 859 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 SENP7Q9BQF6 1050 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 KATNBL1Q9H079 304 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 TFIP11Q9UBB9 837 aaKnown RBP10.87□□□□□ -0.67
LIMA1-211ENST00000552338 NRBP1Q9UHY1 535 aa10.87□□□□□ -0.67
LIMA1-211ENST00000552338 FAM237AA0A1B0GTK4 181 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 SPTLC2O15270 562 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 SLC26A4O43511 780 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 SLC37A4O43826 429 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 NEMFO60524 1076 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 FKTNO75072 461 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 TDP2O95551 362 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 PGK2P07205 417 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 EIF2AK2P19525 551 aaKnown RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 HOXD10P28358 340 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 PSMC4P43686 418 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 FXR2P51116 673 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 KIF22Q14807 665 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 ARHGEF6Q15052 776 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 ZNF174Q15697 407 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 AXDND1Q5T1B0 1012 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 FOXD4L5Q5VV16 416 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 NLRX1Q86UT6 975 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 IGSF22Q8N9C0 903 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 IL31RAQ8NI17 732 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 NPLOC4Q8TAT6 608 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 FOXD4L4Q8WXT5 416 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 TRIM47Q96LD4 638 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 SPATA32Q96LK8 384 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 PURBQ96QR8 312 aaKnown RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 RIT2Q99578 217 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms