RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 FAM169BQ8N8A8 192 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 C19orf47Q8N9M1 422 aaKnown RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 PPP1R14AQ96A00 147 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 CRAMP1Q96RY5 1269 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 TRIM8Q9BZR9 551 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 MKRN2Q9H000 416 aaKnown RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 BCAS3Q9H6U6 928 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 PHAXQ9H814 394 aaKnown RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 CNNM2Q9H8M5 875 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 AP5S1Q9NUS5 200 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 CDK11AQ9UQ88 783 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 TMA7Q9Y2S6 64 aaKnown RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 TESMINQ9Y4I5 508 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 A0A1W2PQH9 124 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 AGRPO00253 132 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 TNFRSF10CO14798 259 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 RGS13O14921 159 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CLSTN1O94985 981 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 ZNF202O95125 648 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 NAT2P11245 290 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 POLR2BP30876 1174 aaKnown RBP3.3□□□□□ -1.88
LIMA1-209ENST00000552008 BMP8BP34820 402 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CCNFP41002 786 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CASP7P55210 303 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 SLC7A5Q01650 507 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 FOXE3Q13461 319 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 NCAPHQ15003 741 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 MCTP2Q6DN12 878 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 KIAA1211LQ6NV74 962 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 DPY19L2P1Q6NXN4 242 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 C6orf15Q6UXA7 325 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-209ENST00000552008 PLEKHH3Q7Z736 793 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 NOP9Q86U38 636 aaKnown RBP3.3□□□□□ -1.88
LIMA1-209ENST00000552008 JAMLQ86YT9 394 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 FAM178BQ8IXR5 827 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CCDC144CPQ8IYA2 1237 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 TAB3Q8N5C8 712 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-209ENST00000552008 LINC00482Q8N8I6 264 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 IGDCC4Q8TDY8 1250 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CPA5Q8WXQ8 436 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 ZG16BQ96DA0 208 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 SLC6A18Q96N87 628 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 WWC2-AS2Q96NR7 200 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 PDLIM7Q9NR12 457 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 CHST7Q9NS84 486 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 FAM86C1Q9NVL1 165 aa3.3□□□□□ -1.88
LIMA1-209ENST00000552008 A0A087X1B8 175 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 MEIS1O00470 390 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 PDPK1O15530 556 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 KLF4O43474 513 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 B4GALT3O60512 393 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 DNAJA2O60884 412 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 GJB6O95452 261 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 TP53P04637 393 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 TACR1P25103 407 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 RPL13P26373 211 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 THBS2P35442 1172 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 RGS19P49795 217 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 CACNB2Q08289 660 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 TCEAL1Q15170 157 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 DDR2Q16832 855 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 KRTAP15-1Q3LI76 137 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 MTERF2Q49AM1 385 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 MIIPQ5JXC2 388 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 TDRD10Q5VZ19 366 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 HLA-DQA1Q5Y7H0 255 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 HEATR6Q6AI08 1181 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 IGFL4Q6B9Z1 124 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 EEPD1Q7L9B9 569 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 ADAT2Q7Z6V5 191 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 CELF2-AS1Q8N7Q2 184 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 NAT16Q8N8M0 369 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 TXNDC5Q8NBS9 432 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 SMARCC1Q92922 1105 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 MKL1Q969V6 931 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 DDX11Q96FC9 970 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 DEPDC7Q96QD5 511 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 SLC9A7Q96T83 725 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 LRP2BPQ9P2M1 347 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 FBXL21Q9UKT6 434 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 PCDHB10Q9UN67 800 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 ZFR2Q9UPR6 939 aaKnown RBP3.29□□□□□ -1.88
LIMA1-209ENST00000552008 SUGT1Q9Y2Z0 365 aa3.29□□□□□ -1.88
LIMA1-209ENST00000552008 KRTAP29-1A8MX34 341 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 PATE3B3GLJ2 98 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 ACRP10323 421 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 VAV1P15498 845 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 IL12RB1P42701 662 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 INHBCP55103 352 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 ZYXQ15942 572 aaKnown RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 SV2CQ496J9 727 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 NOL9Q5SY16 702 aaKnown RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 NBPF12Q5TAG4 269 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 USP33Q8TEY7 942 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 TSPAN17Q96FV3 270 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 LCORQ96JN0 433 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 ZNF512BQ96KM6 892 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 IPO9Q96P70 1041 aaKnown RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 APBA2Q99767 749 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms