RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SEMA6BQ9H3T3 888 aa18.92■□□□□ 0.62
VPS29-207ENST00000549970 IL23AQ9NPF7 189 aa18.92■□□□□ 0.62
VPS29-207ENST00000549970 MRVI1Q9Y6F6 885 aa18.92■□□□□ 0.62
VPS29-207ENST00000549970 EYSQ5T1H1 3165 aa18.92■□□□□ 0.62
VPS29-207ENST00000549970 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.91■□□□□ 0.62
VPS29-207ENST00000549970 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.91■□□□□ 0.62
VPS29-207ENST00000549970 CCDC69A6NI79 296 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 SUPT20HL2P0C7V6 817 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 KIF5BP33176 963 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 SAMD3Q8N6K7 520 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 TMEM87BQ96K49 555 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 MTA3Q9BTC8 594 aa18.91■□□□□ 0.62
VPS29-207ENST00000549970 TTYH1Q9H313 450 aaPredicted RBP18.91■□□□□ 0.62
VPS29-207ENST00000549970 DDX41Q9UJV9 622 aaKnown RBP18.91■□□□□ 0.62
VPS29-207ENST00000549970 RXRAP19793 462 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 PGM5Q15124 567 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 NFRKBQ6P4R8 1299 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 IL31RAQ8NI17 732 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 SCLYQ96I15 445 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 ZFP91Q96JP5 570 aaPredicted RBP18.9■□□□□ 0.62
VPS29-207ENST00000549970 MAP3K14Q99558 947 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 SPZ1Q9BXG8 430 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 LRRC2Q9BYS8 371 aa18.9■□□□□ 0.62
VPS29-207ENST00000549970 PLEKHA8P1O95397 391 aa18.89■□□□□ 0.61
VPS29-207ENST00000549970 DNAJB2P25686 324 aa18.89■□□□□ 0.61
VPS29-207ENST00000549970 RAB11FIP4Q86YS3 637 aa18.89■□□□□ 0.61
VPS29-207ENST00000549970 TMTC2Q8N394 836 aa18.89■□□□□ 0.61
VPS29-207ENST00000549970 RRP36Q96EU6 259 aaKnown RBP18.89■□□□□ 0.61
VPS29-207ENST00000549970 CDX2Q99626 313 aaPredicted RBP18.89■□□□□ 0.61
VPS29-207ENST00000549970 MYH7BA7E2Y1 1941 aa18.89■□□□□ 0.61
VPS29-207ENST00000549970 GRXCR1A8MXD5 290 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 SORBS3O60504 671 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 RGS20O76081 388 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 FGBP02675 491 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 CASTP20810 708 aaKnown RBP18.88■□□□□ 0.61
VPS29-207ENST00000549970 CCND2P30279 289 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 DGKDQ16760 1214 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 RASIP1Q5U651 963 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 OTOP2Q7RTS6 562 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 VSIG10LQ86VR7 867 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 DHX37Q8IY37 1157 aaKnown RBP18.88■□□□□ 0.61
VPS29-207ENST00000549970 CMTR1Q8N1G2 835 aaKnown RBP18.88■□□□□ 0.61
VPS29-207ENST00000549970 HERVK_113Q902F9 699 aa18.88■□□□□ 0.61
VPS29-207ENST00000549970 CXXC1Q9P0U4 656 aaPredicted RBP18.88■□□□□ 0.61
VPS29-207ENST00000549970 SEC63Q9UGP8 760 aaKnown RBP18.88■□□□□ 0.61
VPS29-207ENST00000549970 A0A0C4DFX4 3053 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 LIFRP42702 1097 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 GNAQP50148 359 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 PTPN11Q06124 597 aaPredicted RBP18.87■□□□□ 0.61
VPS29-207ENST00000549970 LAMC2Q13753 1193 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 RNF20Q5VTR2 975 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 SRBD1Q8N5C6 995 aaKnown RBP18.87■□□□□ 0.61
VPS29-207ENST00000549970 MYLIPQ8WY64 445 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 KAT2BQ92831 832 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 EMID1Q96A84 441 aaPredicted RBP18.87■□□□□ 0.61
VPS29-207ENST00000549970 LZTS2Q9BRK4 669 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 MTIF3Q9H2K0 278 aaKnown RBP18.87■□□□□ 0.61
VPS29-207ENST00000549970 NOD1Q9Y239 953 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 SLC12A7Q9Y666 1083 aa18.87■□□□□ 0.61
VPS29-207ENST00000549970 UNC80Q8N2C7 3258 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 TMEM265A0A087WTH1 108 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 CDC45O75419 566 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 CALM1P0DP23 149 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 CALM2P0DP24 149 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 CALM3P0DP25 149 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 SMARCA1P28370 1054 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 PBX2P40425 430 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 KCNV1Q6PIU1 500 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 RPUSD2Q8IZ73 545 aaKnown RBP18.86■□□□□ 0.61
VPS29-207ENST00000549970 PPTC7Q8NI37 304 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 GPKOWQ92917 476 aaPredicted RBP eCLIP18.86■□□□□ 0.61
VPS29-207ENST00000549970 TIFAQ96CG3 184 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 PBX4Q9BYU1 374 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 SCN5AQ14524 2016 aa18.86■□□□□ 0.61
VPS29-207ENST00000549970 GGPS1O95749 300 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 ZNF286BP0CG31 522 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 UBA1P22314 1058 aaKnown RBP18.85■□□□□ 0.61
VPS29-207ENST00000549970 PTGISQ16647 500 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 MYSM1Q5VVJ2 828 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 DEFB128Q7Z7B8 93 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 MICU3Q86XE3 530 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 SMARCC2Q8TAQ2 1214 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 CUL5Q93034 780 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 CCDC136Q96JN2 1154 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 SPATA33Q96N06 139 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 NEK1Q96PY6 1258 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 ALG1Q9BT22 464 aa18.85■□□□□ 0.61
VPS29-207ENST00000549970 PRUNE2Q8WUY3 3088 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 hCG_1642624A0A1W2PR95 340 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 ZBBXA8MT70 800 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 PSEN2P49810 448 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 SP2Q02086 613 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 BFSP2Q13515 415 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 CELF3Q5SZQ8 465 aaKnown RBP18.84■□□□□ 0.61
VPS29-207ENST00000549970 GDF6Q6KF10 455 aaPredicted RBP18.84■□□□□ 0.61
VPS29-207ENST00000549970 USP17L6PQ6QN14 398 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 CCDC82Q8N4S0 544 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 RETREG2Q8NC44 543 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 VWCEQ96DN2 955 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 TCEANC2Q96MN5 208 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms