RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SELPP16109 830 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 KCNA5P22460 613 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 EDNRBP24530 442 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 ERVK-21P61565 698 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 CTDSPL2Q05D32 466 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 TCTN1Q2MV58 587 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 SYDE2Q5VT97 1194 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 GDF6Q6KF10 455 aaPredicted RBP15.05■□□□□ -0
SCAF11-208ENST00000546534 CNKSR3Q6P9H4 555 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 BTNL9Q6UXG8 535 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.05■□□□□ -0
SCAF11-208ENST00000546534 CAGE1Q8TC20 777 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 DCAF4Q8WV16 495 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 DHX38Q92620 1227 aaKnown RBP15.05■□□□□ -0
SCAF11-208ENST00000546534 RAD9AQ99638 391 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 RYDENQ9NUL5 291 aaKnown RBP15.05■□□□□ -0
SCAF11-208ENST00000546534 PTPRSQ13332 1948 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 NBNO60934 754 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 ARIH2O95376 493 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 GJB5O95377 273 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 IL9P15248 144 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 NOVP48745 357 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 RNF207Q6ZRF8 634 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 EFCAB3Q8N7B9 438 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 GPATCH3Q96I76 525 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 UIMC1Q96RL1 719 aa15.04■□□□□ -0
SCAF11-208ENST00000546534 FRMPD2Q68DX3 1309 aaPredicted RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 FOXP2O15409 715 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 RANBP6O60518 1105 aaKnown RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 CXCL10P02778 98 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 SSTR3P32745 418 aaPredicted RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 MRE11P49959 708 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 RPS6P62753 249 aaKnown RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 ASTLQ6HA08 431 aaPredicted RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 PTCRAQ6ISU1 281 aaPredicted RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 FAM117BQ6P1L5 589 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 DNERQ8NFT8 737 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 AFG1LQ8WV93 481 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 KAT2BQ92831 832 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 MPHOSPH6Q99547 160 aaKnown RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 CHMP4BQ9H444 224 aaKnown RBP15.03■□□□□ -0
SCAF11-208ENST00000546534 GPCPD1Q9NPB8 672 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 PLSCR2Q9NRY7 297 aa15.03■□□□□ -0
SCAF11-208ENST00000546534 ABHD14A-ACY1A0A1B0GW23 586 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 CKBP12277 381 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 RBL2Q08999 1139 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 ZMYM1Q5SVZ6 1142 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 CCDC62Q6P9F0 684 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 SESTD1Q86VW0 696 aa15.02■□□□□ -0
SCAF11-208ENST00000546534 GRXCR2A6NFK2 248 aa15.01□□□□□ -0.01
SCAF11-208ENST00000546534 ATMINO43313 823 aaPredicted RBP15.01□□□□□ -0.01
SCAF11-208ENST00000546534 PARNO95453 639 aaKnown RBP15.01□□□□□ -0.01
SCAF11-208ENST00000546534 MMP3P08254 477 aa15.01□□□□□ -0.01
SCAF11-208ENST00000546534 ALADP13716 330 aa15.01□□□□□ -0.01
SCAF11-208ENST00000546534 CRBNQ96SW2 442 aa15.01□□□□□ -0.01
SCAF11-208ENST00000546534 C17orf80Q9BSJ5 609 aa15.01□□□□□ -0.01
SCAF11-208ENST00000546534 ORC4O43929 436 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 GH1P01241 217 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 TOP1P11387 765 aaKnown RBP15□□□□□ -0.01
SCAF11-208ENST00000546534 IKBKEQ14164 716 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 LY6KQ17RY6 165 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 CSPP1Q1MSJ5 1256 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 FBXO22Q8NEZ5 403 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 TMEM47Q9BQJ4 181 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 FSD1Q9BTV5 496 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 HDAC6Q9UBN7 1215 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 GTF2IRD1Q9UHL9 959 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 ANAPC4Q9UJX5 808 aa15□□□□□ -0.01
SCAF11-208ENST00000546534 TRIP12Q14669 1992 aaPredicted RBP15□□□□□ -0.01
SCAF11-208ENST00000546534 WDR19Q8NEZ3 1342 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 B4DLN1 442 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 H3BQ06 376 aaPredicted RBP14.99□□□□□ -0.01
SCAF11-208ENST00000546534 EFCAB14O75071 495 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 CASTP20810 708 aaKnown RBP14.99□□□□□ -0.01
SCAF11-208ENST00000546534 MRPL12P52815 198 aaKnown RBP14.99□□□□□ -0.01
SCAF11-208ENST00000546534 NHLH1Q02575 133 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 ARHGAP1Q07960 439 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 ZNF618Q5T7W0 954 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 TRAF7Q6Q0C0 670 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 CHST3Q7LGC8 479 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 C7orf31Q8N865 590 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 NEK9Q8TD19 979 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 DCTPP1Q9H773 170 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 PNMA2Q9UL42 364 aa14.99□□□□□ -0.01
SCAF11-208ENST00000546534 POTEB3A0JP26 581 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 DCXO43602 365 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 FGRP09769 529 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 PDHBP11177 359 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 PTK7Q13308 1070 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 MBTPS1Q14703 1052 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 TRIM71Q2Q1W2 868 aaKnown RBP14.98□□□□□ -0.01
SCAF11-208ENST00000546534 PUS10Q3MIT2 529 aaKnown RBP14.98□□□□□ -0.01
SCAF11-208ENST00000546534 VPS53Q5VIR6 699 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 POTEBQ6S5H4 581 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.98□□□□□ -0.01
SCAF11-208ENST00000546534 SEPT14Q6ZU15 432 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 PI4K2BQ8TCG2 481 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 WNT8BQ93098 351 aa14.98□□□□□ -0.01
SCAF11-208ENST00000546534 MRPL38Q96DV4 380 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms