RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 BBXQ8WY36 941 aaPredicted RBP16.7■□□□□ 0.26
USP28-214ENST00000545540 PCDHAC2Q9Y5I4 1007 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 BICDL2A1A5D9 508 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 PDHBP11177 359 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 TRADDQ15628 312 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 HPCAL4Q9UM19 191 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 MEIS1O00470 390 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 MAGEA1P43355 309 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 GRAPQ13588 217 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 DOK7Q18PE1 504 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 PAPD7Q5XG87 772 aaKnown RBP16.7■□□□□ 0.26
USP28-214ENST00000545540 GRAPLQ8TC17 118 aaPredicted RBP16.7■□□□□ 0.26
USP28-214ENST00000545540 MTMR8Q96EF0 704 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 C7orf25Q9BPX7 421 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 POLLQ9UGP5 575 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 PPP1R11O60927 126 aaPredicted RBP16.69■□□□□ 0.26
USP28-214ENST00000545540 TCP10Q12799 353 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 CNNM4Q6P4Q7 775 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 EIF3CLB5ME19 914 aaKnown RBP16.69■□□□□ 0.26
USP28-214ENST00000545540 USP17L10C9JJH3 530 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 VAV2P52735 878 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 KCTD16Q68DU8 428 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 CREG2Q8IUH2 290 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 EIF3CQ99613 913 aaKnown RBP16.69■□□□□ 0.26
USP28-214ENST00000545540 IKZF4Q9H2S9 585 aa16.69■□□□□ 0.26
USP28-214ENST00000545540 DDX4Q9NQI0 724 aaKnown RBP16.69■□□□□ 0.26
USP28-214ENST00000545540 POLR2FP61218 127 aaKnown RBP16.68■□□□□ 0.26
USP28-214ENST00000545540 CCDC40Q4G0X9 1142 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 NEDD1Q8NHV4 660 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 PACSIN1Q9BY11 444 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 FEZ2Q9UHY8 353 aaPredicted RBP16.68■□□□□ 0.26
USP28-214ENST00000545540 IRS2Q9Y4H2 1338 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 MYO1CO00159 1063 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 RHBDL3P58872 404 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 TRAPPC3LQ5T215 181 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 CCDC181Q5TID7 509 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 IFT81Q8WYA0 676 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 SIK3Q9Y2K2 1263 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 AMPD3Q01432 767 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 LRRC31Q6UY01 552 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 C16orf86Q6ZW13 317 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 ZNF219Q9P2Y4 722 aaPredicted RBP16.68■□□□□ 0.26
USP28-214ENST00000545540 KIAA1024Q9UPX6 916 aa16.68■□□□□ 0.26
USP28-214ENST00000545540 ACTN1P12814 892 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 ADCY7P51828 1080 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 CENPPQ6IPU0 288 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 THRAP3Q9Y2W1 955 aaKnown RBP16.67■□□□□ 0.26
USP28-214ENST00000545540 POTEB3A0JP26 581 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 POTECB2RU33 542 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 AGPSO00116 658 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 KRT79Q5XKE5 535 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 POTEBQ6S5H4 581 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 CCNI2Q6ZMN8 369 aaPredicted RBP16.67■□□□□ 0.26
USP28-214ENST00000545540 ADGRF4Q8IZF3 695 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 DAGLBQ8NCG7 672 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 SPZ1Q9BXG8 430 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 GBP3Q9H0R5 595 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 LDHCP07864 332 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 GSTO1P78417 241 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 KCNMA1Q12791 1236 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 PRR5LQ6MZQ0 368 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 WDR93Q6P2C0 686 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 ZFPM1Q8IX07 1006 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 SPATA4Q8NEY3 305 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 GOLGA5Q8TBA6 731 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 ANKS1AQ92625 1134 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 OSBPL9Q96SU4 736 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 RBM12Q9NTZ6 932 aaKnown RBP16.67■□□□□ 0.26
USP28-214ENST00000545540 SNX12Q9UMY4 172 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 PLAGL2Q9UPG8 496 aa16.67■□□□□ 0.26
USP28-214ENST00000545540 RRP15Q9Y3B9 282 aaKnown RBP16.67■□□□□ 0.26
USP28-214ENST00000545540 ROBO1Q9Y6N7 1651 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 SNED1Q8TER0 1413 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 PRPHP41219 470 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 GOLGA6L1Q8N7Z2 621 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 MTMR9Q96QG7 549 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 KCNQ5Q9NR82 932 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 ADAMTS1Q9UHI8 967 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 USO1O60763 962 aaKnown RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 TACC1O75410 805 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 GUCY2FP51841 1108 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 RAPGEF1Q13905 1077 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 FAM114A1Q8IWE2 563 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 SH2D3CQ8N5H7 860 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 AK8Q96MA6 479 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 NUP58Q9BVL2 599 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 SH2D4AQ9H788 454 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 DDX25Q9UHL0 483 aaKnown RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 TUBB2AQ13885 445 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 HERC4Q5GLZ8 1057 aaPredicted RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 FAM133AQ8N9E0 248 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 TSEN2Q8NCE0 465 aaKnown RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 FAM71BQ8TC56 605 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 ERGIC2Q96RQ1 377 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 TUBB2BQ9BVA1 445 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 LSM14BQ9BX40 385 aaKnown RBP16.66■□□□□ 0.26
USP28-214ENST00000545540 JMJD4Q9H9V9 463 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 MTMR4Q9NYA4 1195 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 GGA1Q9UJY5 639 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms