RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 VTA1Q9NP79 307 aa16.52■□□□□ 0.24
TNFRSF1A-216ENST00000543995 RTEL1Q9NZ71 1219 aa16.52■□□□□ 0.24
TNFRSF1A-216ENST00000543995 KIAA1217Q5T5P2 1943 aa16.52■□□□□ 0.23
TNFRSF1A-216ENST00000543995 VPS37CA5D8V6 355 aaPredicted RBP16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 EIF3JO75822 258 aaKnown RBP16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CCND3P30281 292 aaPredicted RBP16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ZNF76P36508 570 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ARHGAP4P98171 946 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MAP3K21Q5TCX8 1036 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 XRRA1Q6P2D8 792 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 SEPT14Q6ZU15 432 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TBCKQ8TEA7 893 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FOXP1Q9H334 677 aaPredicted RBP16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 HMX1Q9NP08 348 aaPredicted RBP16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 NRBP1Q9UHY1 535 aa16.51■□□□□ 0.23
TNFRSF1A-216ENST00000543995 STAM2O75886 525 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ZNF865P0CJ78 1059 aaPredicted RBP16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 SYT1P21579 422 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MRPS9P82933 396 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 INF2Q27J81 1249 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 RBM19Q9Y4C8 960 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MTFR1Q15390 333 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CCDC144BQ3MJ40 725 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 GNPTABQ3T906 1256 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 NLRX1Q86UT6 975 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TRPV1Q8NER1 839 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ARMC5Q96C12 935 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ZNF333Q96JL9 665 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 KATNBL1Q9H079 304 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 PDGFCQ9NRA1 345 aa16.5■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CCL5P13501 91 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 AKR1A1P14550 325 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ADCYAP1R1P41586 468 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 EARS2Q5JPH6 523 aaKnown RBP16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TNFRSF25Q93038 417 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 RNF208Q9H0X6 261 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 UNC93B1Q9H1C4 597 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FAM184BQ9ULE4 1060 aa16.49■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FAM205CA6NFA0 338 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 KIF28PB7ZC32 967 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 SEPT4O43236 478 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 STX6O43752 255 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CYP3A4P08684 503 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 USP11P51784 963 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TTLL4Q14679 1199 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TAPT1Q6NXT6 567 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 NEK8Q86SG6 692 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 NOSTRINQ8IVI9 506 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 SCFD2Q8WU76 684 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MXRA8Q9BRK3 442 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 WDR11Q9BZH6 1224 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MRVI1Q9Y6F6 885 aa16.48■□□□□ 0.23
TNFRSF1A-216ENST00000543995 RGS20O76081 388 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ITGB5P18084 799 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 U2AF2P26368 475 aaKnown RBP eCLIP16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TNFAIP2Q03169 654 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MTMR1Q13613 665 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 LETM2Q2VYF4 491 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CEP55Q53EZ4 464 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 ANO1Q5XXA6 986 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 IQSEC1Q6DN90 963 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CRYGNQ8WXF5 182 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 INPP4AQ96PE3 977 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 JADE2Q9NQC1 790 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 UBIAD1Q9Y5Z9 338 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 HTTP42858 3142 aa16.47■□□□□ 0.23
TNFRSF1A-216ENST00000543995 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FAM86B1E9PN63 330 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FIBPO43427 364 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 MSCO60682 206 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 FAM86B2P0C5J1 330 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 TXNP10599 105 aaKnown RBP16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 PDIA4P13667 645 aaKnown RBP16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 PRR16Q569H4 304 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 KCNV1Q6PIU1 500 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 PLA2G4DQ86XP0 818 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CYP2W1Q8TAV3 490 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 GPRASP2Q96D09 838 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 DDX20Q9UHI6 824 aaKnown RBP16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 NOL7Q9UMY1 257 aaKnown RBP16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 CENPFP49454 3210 aa16.46■□□□□ 0.23
TNFRSF1A-216ENST00000543995 RBM47A0AV96 593 aaKnown RBP16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 CCNT1O60563 726 aaKnown RBP16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 RARBP10826 455 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 ATP2B1P20020 1258 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 CIITAP33076 1130 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 FERMT3Q86UX7 667 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 TNS4Q8IZW8 715 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 CDHR1Q96JP9 859 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 NAP1L4Q99733 375 aaKnown RBP16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 TMEM106CQ9BVX2 250 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 MTMR6Q9Y217 621 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 TDP2O95551 362 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 TGFB3P10600 412 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 SMPD1P17405 629 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 ICAM3P32942 547 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 SETQ01105 290 aaPredicted RBP16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 LY6KQ17RY6 165 aa16.45■□□□□ 0.22
TNFRSF1A-216ENST00000543995 LENG1Q96BZ8 264 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms