RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 STK3Q13188 491 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 PPP2R5BQ15173 497 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 FSCN1Q16658 493 aaKnown RBP11.21□□□□□ -0.61
YBX3-212ENST00000542002 PFKFB3Q16875 520 aaPredicted RBP11.21□□□□□ -0.61
YBX3-212ENST00000542002 TRIM60Q495X7 471 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 CXCL17Q6UXB2 119 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 SCFD2Q8WU76 684 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 BARHL2Q9NY43 387 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 RTEL1Q9NZ71 1219 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 ZMYND8Q9ULU4 1186 aaPredicted RBP11.21□□□□□ -0.61
YBX3-212ENST00000542002 MCM3APO60318 1980 aa11.21□□□□□ -0.62
YBX3-212ENST00000542002 CCDC196A0A1B0GTZ2 297 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SMCO2A6NFE2 343 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 MOXD2PA6NHM9 499 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 B4DLN1 442 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 IFNAR1P17181 557 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 CDK7P50613 346 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 MRPL12P52815 198 aaKnown RBP11.2□□□□□ -0.62
YBX3-212ENST00000542002 ARHGAP1Q07960 439 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SCRN1Q12765 414 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SEMA3FQ13275 785 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 C1orf53Q5VUE5 145 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SH3RF1Q7Z6J0 888 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 OR6J1Q8NGC5 347 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SMARCC2Q8TAQ2 1214 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 MPHOSPH6Q99547 160 aaKnown RBP11.2□□□□□ -0.62
YBX3-212ENST00000542002 AP5M1Q9H0R1 490 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 SPC25Q9HBM1 224 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 RIC8AQ9NPQ8 531 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 TMEM260Q9NX78 707 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 COLQQ9Y215 455 aaPredicted RBP11.2□□□□□ -0.62
YBX3-212ENST00000542002 ATP11BQ9Y2G3 1177 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 TELO2Q9Y4R8 837 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 NR2E3Q9Y5X4 410 aa11.2□□□□□ -0.62
YBX3-212ENST00000542002 FRMPD3Q5JV73 1810 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 TRIM43BA6NCK2 446 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 A6NJR5 290 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 SORBS3O60504 671 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 LARGE1O95461 756 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 CTDNEP1O95476 244 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 SCG2P13521 617 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 ITGB8P26012 769 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 CCND2P30279 289 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 CLK2P49760 499 aaKnown RBP11.19□□□□□ -0.62
YBX3-212ENST00000542002 NEK4P51957 841 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 NAPAP54920 295 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PSMC6P62333 389 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 TLE2Q04725 743 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 TTLL4Q14679 1199 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 ME3Q16798 604 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PIP4P2Q8N4L2 257 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PCSK9Q8NBP7 692 aaKnown RBP11.19□□□□□ -0.62
YBX3-212ENST00000542002 PPP1R13LQ8WUF5 828 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 AFG1LQ8WV93 481 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 TRIM43Q96BQ3 446 aaPredicted RBP11.19□□□□□ -0.62
YBX3-212ENST00000542002 PGBD1Q96JS3 809 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 AIFM3Q96NN9 605 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 SLC26A6Q9BXS9 759 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PRO3102Q9H379 93 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 STARD7Q9NQZ5 370 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PCDHA6Q9UN73 950 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 PCDHA8Q9Y5H6 950 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
YBX3-212ENST00000542002 LRRC37A2A6NM11 1700 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 ELP1O95163 1332 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 RANBP2P49792 3224 aaKnown RBP11.18□□□□□ -0.62
YBX3-212ENST00000542002 SPATA31C2B4DYI2 1134 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 NKRFO15226 690 aaKnown RBP eCLIP11.18□□□□□ -0.62
YBX3-212ENST00000542002 PFKFB2O60825 505 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 ITGB5P18084 799 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 PURAQ00577 322 aaKnown RBP11.18□□□□□ -0.62
YBX3-212ENST00000542002 FAAP100Q0VG06 881 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 MYSM1Q5VVJ2 828 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 PCNX4Q63HM2 1172 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 NECAB1Q8N987 351 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 SLC43A3Q8NBI5 491 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 CYP2W1Q8TAV3 490 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 CUL5Q93034 780 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 INPP4AQ96PE3 977 aaPredicted RBP11.18□□□□□ -0.62
YBX3-212ENST00000542002 RNF26Q9BY78 433 aaPredicted RBP11.18□□□□□ -0.62
YBX3-212ENST00000542002 MRVI1Q9Y6F6 885 aa11.18□□□□□ -0.62
YBX3-212ENST00000542002 ALPK3Q96L96 1907 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ARVCFO00192 962 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 EDIL3O43854 480 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 PQBP1O60828 265 aaKnown RBP11.17□□□□□ -0.62
YBX3-212ENST00000542002 ATP9AO75110 1047 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 MYL3P08590 195 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ICAM3P32942 547 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ADCY7P51828 1080 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ST3GAL1Q11201 340 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 CELF3Q5SZQ8 465 aaKnown RBP11.17□□□□□ -0.62
YBX3-212ENST00000542002 PPP1R18Q6NYC8 613 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ANKRD33Q7Z3H0 272 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 KAT2BQ92831 832 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 EMID1Q96A84 441 aaPredicted RBP11.17□□□□□ -0.62
YBX3-212ENST00000542002 VTI1AQ96AJ9 217 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 GLT1D1Q96MS3 346 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 C22orf23Q9BZE7 217 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 ZMYND12Q9H0C1 365 aa11.17□□□□□ -0.62
YBX3-212ENST00000542002 VPS54Q9P1Q0 977 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms