RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 USP16Q9Y5T5 823 aa6.91□□□□□ -1.3
CPSF7-220ENST00000541963 USP42Q9H9J4 1324 aaKnown RBP6.91□□□□□ -1.3
CPSF7-220ENST00000541963 KCPQ6ZWJ8 1503 aa6.91□□□□□ -1.3
CPSF7-220ENST00000541963 MYH14Q7Z406 1995 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 A1BGP04217 495 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 TM4SF1P30408 202 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 POLR2BP30876 1174 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 PMS1P54277 932 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 RNF4P78317 190 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 ZYXQ15942 572 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 KIAA1211LQ6NV74 962 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 LETMD1Q6P1Q0 360 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 BEND4Q6ZU67 534 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 UBE3DQ7Z6J8 389 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 MEGF10Q96KG7 1140 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 SLC6A18Q96N87 628 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 CWC22Q9HCG8 908 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 PRDM10Q9NQV6 1147 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 SUCOQ9UBS9 1254 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 STK17AQ9UEE5 414 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 SRP68Q9UHB9 627 aaKnown RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 ZNF214Q9UL59 606 aaPredicted RBP6.9□□□□□ -1.3
CPSF7-220ENST00000541963 ZNF652Q9Y2D9 606 aa6.9□□□□□ -1.3
CPSF7-220ENST00000541963 COL15A1P39059 1388 aa6.9□□□□□ -1.31
CPSF7-220ENST00000541963 CICQ96RK0 1608 aaPredicted RBP6.9□□□□□ -1.31
CPSF7-220ENST00000541963 TJP1Q07157 1748 aa6.9□□□□□ -1.31
CPSF7-220ENST00000541963 SIPA1L3O60292 1781 aaPredicted RBP6.9□□□□□ -1.31
CPSF7-220ENST00000541963 UBR2Q8IWV8 1755 aa6.9□□□□□ -1.31
CPSF7-220ENST00000541963 DLG5Q8TDM6 1919 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 CENPBP07199 599 aaPredicted RBP6.89□□□□□ -1.31
CPSF7-220ENST00000541963 YY1P25490 414 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 GATA4P43694 442 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 EIF4A1P60842 406 aaKnown RBP6.89□□□□□ -1.31
CPSF7-220ENST00000541963 RASGRF1Q13972 1273 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 MTERF2Q49AM1 385 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 CLEC10AQ8IUN9 316 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 CCDC144CPQ8IYA2 1237 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 NLGN2Q8NFZ4 835 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 THUMPD2Q9BTF0 503 aaKnown RBP6.89□□□□□ -1.31
CPSF7-220ENST00000541963 CHMP4AQ9BY43 222 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 RRP7AQ9Y3A4 280 aaKnown RBP6.89□□□□□ -1.31
CPSF7-220ENST00000541963 LAS1LQ9Y4W2 734 aaKnown RBP6.89□□□□□ -1.31
CPSF7-220ENST00000541963 LTBP3Q9NS15 1303 aa6.89□□□□□ -1.31
CPSF7-220ENST00000541963 SRCAPQ6ZRS2 3230 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 AGRPO00253 132 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 APAF1O14727 1248 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 NPHP1O15259 732 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 SERPINB2P05120 415 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 TCEAL1Q15170 157 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 CLEC4GQ6UXB4 293 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 ARMC10Q8N2F6 343 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 MKRN2Q9H000 416 aaKnown RBP6.88□□□□□ -1.31
CPSF7-220ENST00000541963 STOML1Q9UBI4 398 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 TPX2Q9ULW0 747 aaKnown RBP6.88□□□□□ -1.31
CPSF7-220ENST00000541963 PCDHB10Q9UN67 800 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 MSRB2Q9Y3D2 182 aa6.88□□□□□ -1.31
CPSF7-220ENST00000541963 PRAMEF22A3QJZ6 481 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 KRBA1A5PL33 1030 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 IQCA1LA6NCM1 817 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 C1QTNF9BB2RNN3 333 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 POLRMTO00411 1230 aaKnown RBP6.87□□□□□ -1.31
CPSF7-220ENST00000541963 CHL1O00533 1208 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 UBOX5O94941 541 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 TP53P04637 393 aaPredicted RBP6.87□□□□□ -1.31
CPSF7-220ENST00000541963 GNAI1P63096 354 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 NFIXQ14938 502 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 HEATR6Q6AI08 1181 aaKnown RBP6.87□□□□□ -1.31
CPSF7-220ENST00000541963 KIF6Q6ZMV9 814 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 CDH24Q86UP0 819 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 CD163Q86VB7 1156 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 TOP6BLQ8N6T0 577 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 ST13P5Q8NFI4 369 aaPredicted RBP6.87□□□□□ -1.31
CPSF7-220ENST00000541963 MICAL1Q8TDZ2 1067 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 TP53INP1Q96A56 240 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 DNAJC7Q99615 494 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 APBA2Q99767 749 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 FAM83CQ9BQN1 747 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 EPN3Q9H201 632 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 PIM2Q9P1W9 311 aa6.87□□□□□ -1.31
CPSF7-220ENST00000541963 A0A0G2JLW4 131 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 FAM221BA6H8Z2 402 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 B2RBV5 119 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 ERVV-1B6SEH8 477 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 H0YIN7 160 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 CAMTA2O94983 1202 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 MYL6BP14649 208 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 EIF2S2P20042 333 aaKnown RBP6.86□□□□□ -1.31
CPSF7-220ENST00000541963 PDE6BP35913 854 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 ZNF143P52747 638 aaPredicted RBP6.86□□□□□ -1.31
CPSF7-220ENST00000541963 ST5P78524 1137 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 DDR1Q08345 913 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 CDK5R2Q13319 367 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 RASA3Q14644 834 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 CYP27C1Q4G0S4 372 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 TBC1D9BQ66K14 1250 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 ADAT2Q7Z6V5 191 aaKnown RBP6.86□□□□□ -1.31
CPSF7-220ENST00000541963 TMEM192Q8IY95 271 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 FAM177A1Q8N128 213 aaPredicted RBP6.86□□□□□ -1.31
CPSF7-220ENST00000541963 NGEFQ8N5V2 710 aa6.86□□□□□ -1.31
CPSF7-220ENST00000541963 ZNF669Q96BR6 464 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms