RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 DDX41Q9UJV9 622 aaKnown RBP16.39■□□□□ 0.21
USP28-209ENST00000540925 TBX21Q9UL17 535 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 SCN10AQ9Y5Y9 1956 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 hCG_1642624A0A1W2PR95 340 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 ZEB2O60315 1214 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 PQBP1O60828 265 aaKnown RBP16.38■□□□□ 0.21
USP28-209ENST00000540925 CD4P01730 458 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 PSMA5P28066 241 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 CPT1AP50416 773 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 MDM2Q00987 491 aaPredicted RBP16.38■□□□□ 0.21
USP28-209ENST00000540925 APOBRQ0VD83 1088 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 LY6KQ17RY6 165 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 SEPT14Q6ZU15 432 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 CCDC82Q8N4S0 544 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 OR6J1Q8NGC5 347 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 BRF1Q92994 677 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 SEZ6LQ9BYH1 1024 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 TM6SF1Q9BZW5 370 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 MROH7Q68CQ1 1323 aa16.38■□□□□ 0.21
USP28-209ENST00000540925 GOLGA8AA7E2F4 631 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 GOLGA8BA8MQT2 603 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 CASTP20810 708 aaKnown RBP16.37■□□□□ 0.21
USP28-209ENST00000540925 MRPS9P82933 396 aaKnown RBP16.37■□□□□ 0.21
USP28-209ENST00000540925 TYW1BQ6NUM6 668 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 USP17L6PQ6QN14 398 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 RUFY3Q7L099 469 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 FCHSD1Q86WN1 690 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 IL17RAQ96F46 866 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 POLR3EQ9NVU0 708 aa16.37■□□□□ 0.21
USP28-209ENST00000540925 DCDC2CA8MYV0 355 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 DLL1O00548 723 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 GH1P01241 217 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 HOXD8P13378 290 aaPredicted RBP16.36■□□□□ 0.21
USP28-209ENST00000540925 CCND2P30279 289 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 ADD1P35611 737 aaKnown RBP16.36■□□□□ 0.21
USP28-209ENST00000540925 ITGA7Q13683 1181 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 TOB2Q14106 344 aaPredicted RBP16.36■□□□□ 0.21
USP28-209ENST00000540925 WWC2Q6AWC2 1192 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 TEX2Q8IWB9 1127 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 INPP4AQ96PE3 977 aaPredicted RBP16.36■□□□□ 0.21
USP28-209ENST00000540925 PSTPIP2Q9H939 334 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 PRDM5Q9NQX1 630 aaPredicted RBP16.36■□□□□ 0.21
USP28-209ENST00000540925 PRKAG2Q9UGJ0 569 aa16.36■□□□□ 0.21
USP28-209ENST00000540925 KPNA6O60684 536 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 STAM2O75886 525 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 MYCLP12524 364 aaPredicted RBP16.35■□□□□ 0.21
USP28-209ENST00000540925 METAP2P50579 478 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP28-209ENST00000540925 PSMC6P62333 389 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 NTRK3Q16288 839 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 TDHQ8IZJ6 230 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 AFG1LQ8WV93 481 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 GPKOWQ92917 476 aaPredicted RBP eCLIP16.35■□□□□ 0.21
USP28-209ENST00000540925 BADQ92934 168 aa16.35■□□□□ 0.21
USP28-209ENST00000540925 MTG1Q9BT17 334 aaPredicted RBP16.35■□□□□ 0.21
USP28-209ENST00000540925 UBE2OQ9C0C9 1292 aaKnown RBP16.35■□□□□ 0.21
USP28-209ENST00000540925 V9GY48 417 aaPredicted RBP16.35■□□□□ 0.21
USP28-209ENST00000540925 hCG_1984214I3L0E3 225 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 STXBP3O00186 592 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 SOX1O00570 391 aaPredicted RBP16.34■□□□□ 0.21
USP28-209ENST00000540925 MMP3P08254 477 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 TGFB3P10600 412 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 PDIA3P30101 505 aaKnown RBP16.34■□□□□ 0.21
USP28-209ENST00000540925 ICAM3P32942 547 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 SP2Q02086 613 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 SEMA3FQ13275 785 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 LRIT3Q3SXY7 679 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 MYSM1Q5VVJ2 828 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 PCNX4Q63HM2 1172 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 PPP1R18Q6NYC8 613 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 XRRA1Q6P2D8 792 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 KCNV1Q6PIU1 500 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 HEATR3Q7Z4Q2 680 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 ZNF713Q8N859 430 aaPredicted RBP16.34■□□□□ 0.21
USP28-209ENST00000540925 KAT2BQ92831 832 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 VTI1AQ96AJ9 217 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 LBHD1Q9BQE6 289 aaPredicted RBP16.34■□□□□ 0.21
USP28-209ENST00000540925 TMEM39AQ9NV64 488 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 BARHL2Q9NY43 387 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 MRVI1Q9Y6F6 885 aa16.34■□□□□ 0.21
USP28-209ENST00000540925 CCDC196A0A1B0GTZ2 297 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 TIMP1P01033 207 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 MYL3P08590 195 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 UBA1P22314 1058 aaKnown RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 FGD1P98174 961 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 LAMC2Q13753 1193 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 PFKFB3Q16875 520 aaPredicted RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 BRDTQ58F21 947 aaPredicted RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 CELF3Q5SZQ8 465 aaKnown RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 PPTC7Q8NI37 304 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 SMARCC2Q8TAQ2 1214 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 CUL5Q93034 780 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 ZFP91Q96JP5 570 aaPredicted RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 ALDH8A1Q9H2A2 487 aaPredicted RBP16.33■□□□□ 0.2
USP28-209ENST00000540925 RIC8AQ9NPQ8 531 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 CYP46A1Q9Y6A2 500 aa16.33■□□□□ 0.2
USP28-209ENST00000540925 SPATA31C2B4DYI2 1134 aa16.32■□□□□ 0.2
USP28-209ENST00000540925 B4GALT4O60513 344 aa16.32■□□□□ 0.2
USP28-209ENST00000540925 EPHB4P54760 987 aa16.32■□□□□ 0.2
USP28-209ENST00000540925 ANAPC15P60006 121 aa16.32■□□□□ 0.2
USP28-209ENST00000540925 PKN1Q16512 942 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms